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Akhilv143/README.md

Hi, I'm Akhil V

M.Sc. Bioinformatics


About Me

I'm currently working as a Junior Bioinformatician at Nucleome Informatics, Hyderabad, with a strong focus on transcriptomics and clinical genomics.

My hands-on experience includes:

  • Conducting bulk RNA-seq analysis for Differential Gene Expression (DGE) using DESeq2 to identify key transcriptomic signatures
  • Profiling microRNA NGS data to perform DGE and downstream regulatory network analysis
  • Processing microarray datasets for robust DGE profiling utilizing the limma package
  • Applying immuno-informatics approaches for in silico vaccine design and epitope prediction
  • Performing single-cell RNA-seq downstream analysis, including clustering, annotation, and trajectory inference
  • Carrying out WES variant calling analysis following GATK best practices

Experience

Junior Bioinformatician — Nucleome Informatics, Hyderabad Currently working on Transcriptomics and Metagenomics

Research Intern — Centre for Integrative Omics Data Science (CIODS), Yenepoya University Completed a six-month research internship focused on transcriptomics and clinical genomics data analysis.


Always open to connecting on LinkedIn — let's talk bioinformatics.

LinkedIn

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  1. ccRCC-Microarray-DGE-Limma ccRCC-Microarray-DGE-Limma Public

    DGE analysis of Clear Cell Renal Cell Carcinoma (ccRCC) using merged microarray datasets and Limma in R

    R 1 1

  2. awesome-notebookLM awesome-notebookLM Public

    Forked from bwPhD/awesome-notebookLM

    A curated collection of the strongest NotebookLM slide prompts sourced from the real creative underground . Your go-to resource for AI powerpoint :P

  3. genome-assembly-spades genome-assembly-spades Public

    Nextflow pipeline for bacterial genome assembly using SPAdes with FastQC, Trimmomatic, QUAST, MultiQC

    HTML

  4. HCC-microRNA-Biomarker-Pipeline HCC-microRNA-Biomarker-Pipeline Public

    ranscriptomic Meta-Analysis of miRNA-Target Networks in Hepatocellular Carcinoma"

    R

  5. Hepatocellular-carcinoma-HCC-bulk-rna-seq-DGE Hepatocellular-carcinoma-HCC-bulk-rna-seq-DGE Public

    liver-LIHC-transcriptomics

    R

  6. lung-cancer-rnaseq-analysis lung-cancer-rnaseq-analysis Public

    Differential gene expression and pathway enrichment analysis (GO/KEGG) of bulk RNA-seq data from multiple lung cancer datasets (GSE159857, GSE283245, GSE81089)."

    R