run_all.ps1

[CmdletBinding()]
param(
    [Parameter(Mandatory=$true)][Alias('Input')][string]$InputFile,
    [string]$DatasetConfig = '',
    [string]$Output = 'results',
    [string]$Languages = 'python,r,matlab,fortran',
    [string]$PythonEnvironment = 'distribution-inference',
    [string]$REnvironment = 'distribution-inference',
    [int]$Bootstrap = 1000,
    [int]$Seed = 12345,
    [double]$KsAlpha = 0.05,
    [string]$CiLevels = '0.90,0.95,0.99'
)
$ErrorActionPreference = 'Continue'
$root = $PSScriptRoot
Push-Location $root
$inputPath = $InputFile.Replace('\', '/')
$outputPath = $Output
$configPath = $DatasetConfig.Replace('\', '/')
New-Item -ItemType Directory -Force -Path $outputPath | Out-Null
$common = @('--input', $inputPath, '--output')
$tail = @('--bootstrap', "$Bootstrap", '--seed', "$Seed", '--ks-alpha', "$KsAlpha", '--ci-levels', $CiLevels)
if ($configPath) { $tail = @('--dataset-config', $configPath) + $tail }
$selected = $Languages.Split(',') | ForEach-Object { $_.Trim().ToLowerInvariant() }
$failures = @()

if ($selected -contains 'python') {
    try {
        $env:PYTHONPATH = 'src\python'
        conda run --no-capture-output -n $PythonEnvironment python -m distribution_inference.cli @common (Join-Path $outputPath 'python') @tail
        if ($LASTEXITCODE -ne 0) { throw "exit code $LASTEXITCODE" }
    } catch { $failures += "python: $_"; Write-Warning $failures[-1] }
}
if ($selected -contains 'r') {
    try {
        conda run --no-capture-output -n $REnvironment Rscript 'src\r\distribution_inference.R' @common (Join-Path $outputPath 'r') @tail
        if ($LASTEXITCODE -ne 0) { throw "exit code $LASTEXITCODE" }
    } catch { $failures += "r: $_"; Write-Warning $failures[-1] }
}
if ($selected -contains 'matlab') {
    try {
        if (-not (Get-Command matlab -ErrorAction SilentlyContinue)) { throw 'matlab was not found on PATH' }
        $matArgs = @('--input',$inputPath,'--output',(Join-Path $outputPath 'matlab')) + $tail
        $quoted = ($matArgs | ForEach-Object { "'" + ($_ -replace "'", "''") + "'" }) -join ','
        matlab -batch "addpath('src/matlab'); distribution_inference($quoted);"
        if ($LASTEXITCODE -ne 0) { throw "exit code $LASTEXITCODE" }
    } catch { $failures += "matlab: $_"; Write-Warning $failures[-1] }
}
if ($selected -contains 'fortran') {
    try {
        $binary = 'build\distribution_inference_fortran.exe'
        if (-not (Test-Path $binary)) { & 'scripts\build_fortran.ps1' }
        & $binary @common (Join-Path $outputPath 'fortran') @tail
        if ($LASTEXITCODE -ne 0) { throw "exit code $LASTEXITCODE" }
    } catch { $failures += "fortran: $_"; Write-Warning $failures[-1] }
}
try {
    $env:PYTHONPATH = 'src\python'
    $reportArgs = @('-m','distribution_inference.report','--input',$inputPath,'--results-root',$outputPath)
    if ($configPath) { $reportArgs += @('--dataset-config',$configPath) }
    conda run --no-capture-output -n $PythonEnvironment python @reportArgs
} catch { $failures += "report: $_"; Write-Warning $failures[-1] }
if ($failures.Count) {
    Write-Warning ("Completed with unavailable/failed components:`n  " + ($failures -join "`n  "))
    Pop-Location
    exit 1
}
Write-Host "All selected implementations completed. Results: $outputPath"
Pop-Location