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Commit 9bb2403
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* ProteinInference: adopt the newer ProteomIQon behavior - PSMInput reads the ModelScore column (was PercolatorScore), assignTranscriptsToGenes takes a tryParseProteinID function instead of a regex string, createProteinModelInfoFromEntry reads the GFF3 ID attribute (was Name) and tolerates unknown strand characters as Forward (fixes a runtime match failure), isGene/isRNA generalized over the GFF line type parameter
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* FDRControl: add the PEP value machinery upstreamed from ProteomIQon (getLogisticRegressionFunction, createTargetDecoyHis, calculatePEPValues, logitTransformPepValues, initCalculateLin taking a trace callback instead of an NLog logger)
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#### 0.2.0 (Released 2026-08-29)
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* Upgrade to BioFSharp 2.0.0 (bundles the former BioFSharp.IO package) and migrate the codebase over the breaking API changes
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