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83 lines (77 loc) · 3.46 KB
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[build-system]
requires = ["setuptools>=68"]
build-backend = "setuptools.build_meta"
[project]
name = "biosymphony-bioprospector"
version = "0.1.0"
description = "An agentic harness for discovering biosynthetic pathways to target molecules: enzyme mining, pathway stitching, host-fit review, construct hypotheses, and compute-portable work graphs."
readme = "README.md"
requires-python = ">=3.11"
license = { file = "LICENSE" }
authors = [{ name = "BioSymphony" }]
keywords = [
"bioprospecting",
"pathway-design",
"agentic-workflows",
"bioinformatics",
"planning",
]
classifiers = [
"Development Status :: 3 - Alpha",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = []
[project.urls]
Homepage = "https://github.com/BioSymphony/bioprospector"
Repository = "https://github.com/BioSymphony/bioprospector"
Documentation = "https://github.com/BioSymphony/bioprospector/tree/main/docs"
Issues = "https://github.com/BioSymphony/bioprospector/issues"
[project.optional-dependencies]
dev = [
"pytest>=8.0",
"build>=1.0",
"twine>=5.0",
]
release = [
"pytest>=8.0",
"build>=1.0",
"twine>=5.0",
]
[project.scripts]
bioprospector = "biosymphony_bioprospector.cli:main"
bioprospector-agent-brief = "biosymphony_bioprospector.cli:agent_brief"
bioprospector-campaign-graph = "biosymphony_bioprospector.cli:campaign_graph"
bioprospector-campaign-handoff = "biosymphony_bioprospector.cli:campaign_handoff"
bioprospector-campaign-status = "biosymphony_bioprospector.cli:campaign_status"
bioprospector-candidate-package = "biosymphony_bioprospector.cli:candidate_package"
bioprospector-contract-self-check = "biosymphony_bioprospector.cli:contract_self_check"
bioprospector-doctor = "biosymphony_bioprospector.cli:doctor"
bioprospector-dossier-export = "biosymphony_bioprospector.cli:dossier_export"
bioprospector-elasticblast-bundle = "biosymphony_bioprospector.cli:elasticblast_bundle"
bioprospector-elasticblast-probe = "biosymphony_bioprospector.cli:elasticblast_probe"
bioprospector-evidence-ingest = "biosymphony_bioprospector.cli:evidence_ingest"
bioprospector-genecluster-atlas-contracts = "biosymphony_bioprospector.cli:genecluster_atlas_contracts"
bioprospector-genecluster-atlas-normalizers = "biosymphony_bioprospector.cli:genecluster_atlas_normalizers"
bioprospector-genecluster-atlas-plan = "biosymphony_bioprospector.cli:genecluster_atlas_plan"
bioprospector-input-audit = "biosymphony_bioprospector.cli:input_audit"
bioprospector-issue-dry-run = "biosymphony_bioprospector.cli:issue_dry_run"
bioprospector-new-campaign = "biosymphony_bioprospector.cli:new_campaign"
bioprospector-pareto-rank = "biosymphony_bioprospector.cli:pareto_rank"
bioprospector-preflight = "biosymphony_bioprospector.cli:preflight"
bioprospector-public-demo-smoke = "biosymphony_bioprospector.cli:public_demo_smoke"
bioprospector-retrospective = "biosymphony_bioprospector.cli:retrospective"
bioprospector-runpod-bundle = "biosymphony_bioprospector.cli:runpod_bundle"
bioprospector-self-learning = "biosymphony_bioprospector.cli:self_learning"
bioprospector-stage-contract = "biosymphony_bioprospector.cli:stage_contract"
[tool.setuptools.packages.find]
where = ["src"]
[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
addopts = "-q"