Rename public GitHub site slug

Author: jvogan

.github/ISSUE_TEMPLATE/config.yml

@@ -1,6 +1,6 @@
 blank_issues_enabled: false
 contact_links:
   - name: Security or private-data report
-    url: https://github.com/BioSymphony/biosymphony-cryocore-public/security/advisories/new
+    url: https://github.com/BioSymphony/cryocore/security/advisories/new
     about: Report credentials, private data exposure, or release-process security issues privately.
 

.github/workflows/release.yml

@@ -32,7 +32,7 @@ jobs:
         run: |
           mkdir -p release-artifacts
           python3 scripts/cryocore/public_release_report.py --repo-root . --out release-artifacts/public-release-report.json --json
-          git archive --format=tar.gz --output release-artifacts/biosymphony-cryocore-public-${GITHUB_REF_NAME}.tar.gz HEAD
+          git archive --format=tar.gz --output release-artifacts/cryocore-${GITHUB_REF_NAME}.tar.gz HEAD
           (cd release-artifacts && shasum -a 256 * > SHA256SUMS)
       - uses: actions/upload-artifact@v7
         with:

CITATION.cff

@@ -5,7 +5,7 @@ type: software
 version: "0.1.0-prealpha"
 date-released: 2026-05-23
 license: MIT
-repository-code: "https://github.com/BioSymphony/biosymphony-cryocore-public"
+repository-code: "https://github.com/BioSymphony/cryocore"
 abstract: "A public-safe control plane for cryo-EM evidence workflows, provider launch gates, artifact hashes, license posture, and claim-bounded structural reports."
 authors:
   - name: "BioSymphony contributors"

CONTRIBUTING.md

@@ -1,6 +1,6 @@
 # Contributing
 
-Thanks for helping improve `biosymphony-cryocore-public`.
+Thanks for helping improve `cryocore`.
 
 ## New here?
 

MAINTAINERS.md

@@ -21,7 +21,7 @@ Before public release or tag:
 make clean
 make release-check
 python3 scripts/cryocore/public_release_report.py --repo-root . --json
-python3 scripts/cryocore/public_release_report.py --repo-root . --publish-ready --expected-remote https://github.com/BioSymphony/biosymphony-cryocore-public.git --json
+python3 scripts/cryocore/public_release_report.py --repo-root . --publish-ready --expected-remote https://github.com/BioSymphony/cryocore.git --json
 ```
 
 The `--publish-ready` check is expected to fail while this repo is still local

PUBLIC_RELEASE.md

@@ -39,7 +39,7 @@ For the final public switch after an initial commit, remote, and tag exist, use:
 python3 scripts/cryocore/public_release_report.py \
   --repo-root . \
   --publish-ready \
-  --expected-remote https://github.com/BioSymphony/biosymphony-cryocore-public.git \
+  --expected-remote https://github.com/BioSymphony/cryocore.git \
   --json
 ```
 

campaigns/cryoem-raw-to-atomic-dossier/linear-issues/CRYOCORE-W00-REPO-GITHUB-READINESS.md

@@ -4,7 +4,7 @@ Prepare the CryoCore public checkout for a clean-history public repository, with
 
 ## Inputs
 
-- `repo` - current `biosymphony-cryocore-public` checkout.
+- `repo` - current `cryocore` checkout.
 - `remote` - public repository remote to be added only after scrub and operator approval.
 
 ## Expected Artifacts

campaigns/cryoem-raw-to-atomic-dossier/linear-issues/CRYOCORE-W08-LICENSE-GATED-RUNPOD-SCAFFOLDING.md

@@ -4,7 +4,7 @@ Add prep-only RunPod scaffolding for open and license-gated CryoCore lanes. This
 
 ## Inputs
 
-- `repo` - `path/to/biosymphony-cryocore-public`
+- `repo` - `path/to/cryocore`
 - `license posture` - CryoSPARC, Phenix, and ChimeraX remain runtime-gated; MotionCor3 is open-source but still needs exact build/version verification.
 
 ## Expected Artifacts

docs/assets/repo-layout-tree.svg

@@ -7,7 +7,7 @@ Use this checklist before changing the local public staging repo into a public G
 - Run `make release-check`.
 - Run `python3 scripts/cryocore/public_release_report.py --repo-root . --json`.
 - After the initial public commit, remote, and tag exist, run
-  `python3 scripts/cryocore/public_release_report.py --repo-root . --publish-ready --expected-remote https://github.com/BioSymphony/biosymphony-cryocore-public.git --json`.
+  `python3 scripts/cryocore/public_release_report.py --repo-root . --publish-ready --expected-remote https://github.com/BioSymphony/cryocore.git --json`.
 - Confirm `git remote -v` is empty or points only to the intended public repository.
 - Confirm the first commit is created from the scrubbed public tree, not from private history.
 - Confirm `.runtime/`, `artifacts/`, `outputs/`, raw-data caches, provider logs, and model weights are absent or ignored.