Initial public release: BioSymphony GeneCluster #1
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| name: Build GeneCluster runner image | |
| on: | |
| push: | |
| branches: [main] | |
| paths: | |
| - 'images/genecluster-runner/**' | |
| - '.github/workflows/build-genecluster-runner.yml' | |
| workflow_dispatch: | |
| inputs: | |
| tag: | |
| description: 'Image tag (e.g. v0.1)' | |
| required: false | |
| default: 'v0.1' | |
| permissions: | |
| contents: read | |
| packages: write | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository_owner }}/genecluster-runner | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| outputs: | |
| digest: ${{ steps.build.outputs.digest }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v4 | |
| - name: Log in to GHCR | |
| uses: docker/login-action@v4 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| id: build | |
| uses: docker/build-push-action@v7 | |
| with: | |
| context: ./images/genecluster-runner | |
| file: ./images/genecluster-runner/Dockerfile | |
| platforms: linux/amd64 | |
| push: true | |
| tags: | | |
| ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ inputs.tag || 'v0.1' }} | |
| ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:sha-${{ github.sha }} | |
| labels: | | |
| org.opencontainers.image.source=${{ github.server_url }}/${{ github.repository }} | |
| org.opencontainers.image.description=BioSymphony GeneCluster runner (BLAST+, DIAMOND, MMseqs2, HMMER, miniprot, sra-tools, ncbi-datasets-cli, minimap2, Nextflow) | |
| org.opencontainers.image.licenses=MIT | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| - name: Summary | |
| env: | |
| TAG: ${{ inputs.tag || 'v0.1' }} | |
| DIGEST: ${{ steps.build.outputs.digest }} | |
| SHA: ${{ github.sha }} | |
| run: | | |
| { | |
| echo "## GeneCluster runner image" | |
| echo | |
| echo "- Digest: \`${DIGEST}\`" | |
| echo "- Pin: \`${REGISTRY}/${IMAGE_NAME}@${DIGEST}\`" | |
| echo "- Tags pushed:" | |
| echo " - \`${REGISTRY}/${IMAGE_NAME}:${TAG}\`" | |
| echo " - \`${REGISTRY}/${IMAGE_NAME}:sha-${SHA}\`" | |
| } >> "$GITHUB_STEP_SUMMARY" |