CITATION.cff

cff-version: 1.2.0
message: "If you use BioSymphony GeneCluster in your research, please cite it as below."
title: "BioSymphony GeneCluster"
abstract: >-
  An agent skill for finding biosynthetic gene clusters and assembling pathway
  evidence across genomes and transcriptomes. Drives a pathway, a target
  molecule, or an evidence gap through a multi-stage comparative-genomics
  campaign that scouts public plant, fungal, and microbial sources, finds
  candidate genes via homology and structure search, anchors them to clusters
  via synteny and neighborhood capture, detects biosynthetic gene clusters
  with BGC callers, scores function across a tool jury, checks pathway
  completeness, and produces a reviewable pathway evidence package. Applications include
  bioprospecting toward target molecules, pathway gap-filling, comparative
  atlas building, novel-cluster discovery, and next-experiment design.
  Provides source and query ledgers, route cards with claim ceilings,
  candidate-search contracts, evidence normalizers, reviewable pathway outputs,
  provider-neutral launch bundles, and a 25-tool integration kit. Designed for
  Claude Code, Codex, Symphony, and other agent orchestrators.
authors:
  - name: "BioSymphony contributors"
type: software
license: MIT
keywords:
  - agent-skill
  - agent-orchestration
  - gene-cluster-discovery
  - biosynthetic-gene-clusters
  - biosynthetic-pathway-assembly
  - pathway-gap-filling
  - bioprospecting
  - natural-products
  - comparative-genomics
  - transcriptomics
  - plant-specialized-metabolism
  - bioinformatics
  - evidence-review
  - claude-code
  - codex
  - symphony
  - linear
  - runpod