These guides describe the public integration contract for selected tools. They distinguish upstream availability from a checked repository baseline.
| Guide | Public status |
|---|---|
| antiSMASH | Checked baseline |
| plantiSMASH | Checked baseline |
| cblaster + clinker | Available; end-to-end wrapper check planned |
| JCVI MCScan | Available |
| MMseqs2 | Checked baseline |
| Foldseek + ProstT5 | Checked baseline |
| CLEAN + HIT-EC | Planned |
| PlantCyc + P450 resources | Mixed: public lookup plus provider-gated data |
| Cytoscape.js | Checked baseline |
| Quarto | Checked baseline; upstream update available |
| Proto | Planned |
Use tooling status and version watch as the canonical version table.
A guide is not a promise that every tool is installed locally. Installation scripts are opt-in and may download large files or require external terms. Review versions, hashes, licenses, and resource needs before use.