Merge pull request #471 from CCPBioSim/470-feature-adopt-the-shared-ccpbiosim-configuration

Adopt the shared CCPBioSim configuration and workflows

Author: harryswift01

.github/CONTRIBUTING.md

@@ -1,33 +1,8 @@
 {
   "$schema": "https://docs.renovatebot.com/renovate-schema.json",
   "extends": [
-    "config:best-practices",
-    "helpers:pinGitHubActionDigestsToSemver"
+    "github>CCPBioSim/.github//renovate/default",
+    "github>CCPBioSim/.github//renovate/python"
   ],
-  "timezone": "Europe/London",
-  "schedule": ["after 9am and before 5pm every weekday"],
-  "dependencyDashboard": true,
-  "reviewers": ["harryswift01", "jimboid"],
-  "minimumReleaseAge": "3 days",
-  "packageRules": [
-    {
-      "matchManagers": ["github-actions"],
-      "groupName": "GitHub Actions",
-      "addLabels": ["ci", "dependencies"]
-    },
-    {
-      "matchManagers": ["poetry", "pep621"],
-      "matchDepTypes": ["project.dependencies"],
-      "rangeStrategy": "widen",
-      "groupName": "Software Production Dependencies",
-      "addLabels": ["python", "production-deps"]
-    },
-    {
-      "matchManagers": ["poetry", "pep621"],
-      "matchDepTypes": ["project.optional-dependencies", "build-system.requires"],
-      "rangeStrategy": "replace",
-      "groupName": "Python CI and Dev Tools",
-      "addLabels": ["python", "dev-dependencies"]
-    }
-  ]
+  "reviewers": ["harryswift01", "jimboid"]
 }

.github/ISSUE_TEMPLATE/bug_report.md

@@ -16,39 +16,16 @@ concurrency:
 jobs:
   coveralls:
     name: Build main coverage baseline
-    runs-on: ubuntu-26.04
-    timeout-minutes: 30
-
+    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
     permissions:
       contents: read
       checks: write
       statuses: write
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8
-
-      - name: Set up Python 3.14
-        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405
-        with:
-          python-version: "3.15"
-
-      - name: Install testing dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install -e .[testing]
-
-      - name: Run coverage
-        run: |
-          python -m pytest tests/unit \
-            --cov CodeEntropy \
-            --cov-report term-missing \
-            --cov-report xml \
-            -q
-
-      - name: Upload coverage to Coveralls
-        uses: coverallsapp/github-action@5cbfd81b66ca5d10c19b062c04de0199c215fb6e
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          file: coverage.xml
-          fail-on-error: false
+      pull-requests: write
+    with:
+      package: CodeEntropy
+      test-path: tests/unit
+      os: '["ubuntu-26.04"]'
+      python-versions: '["3.15"]'
+      coverage-python-version: "3.15"
+      timeout-minutes: 30

.github/ISSUE_TEMPLATE/config.yml

@@ -5,35 +5,25 @@ on:
     - cron: '0 8 * * 1-5'
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 concurrency:
   group: daily-${{ github.ref }}
   cancel-in-progress: true
 
 jobs:
   unit:
-    name: Unit (${{ matrix.os }}, py${{ matrix.python-version }})
-    runs-on: ${{ matrix.os }}
-    timeout-minutes: 30
-
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-24.04, macos-26, windows-2025-vs2026]
-        python-version: ["3.12", "3.13", "3.14"]
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Install testing dependencies
-        run: |
-          python -m pip install --upgrade pip
-          python -m pip install -e .[testing]
-
-      - name: Run unit tests
-        run: python -m pytest tests/unit
+    name: Unit
+    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    permissions:
+      contents: read
+      checks: write
+      statuses: write
+      pull-requests: write
+    with:
+      package: CodeEntropy
+      test-path: tests/unit
+      os: '["ubuntu-24.04", "macos-26", "windows-2025-vs2026"]'
+      coverage: false
+      timeout-minutes: 30