Merge pull request #476 from CCPBioSim/473-move-to-the-shared-ccpbiosim-workflows-release-090

Move to the shared CCPBioSim workflows release 0.12.0

Author: harryswift01

.github/workflows/coveralls-main.yaml

@@ -16,7 +16,7 @@ concurrency:
 jobs:
   coveralls:
     name: Build main coverage baseline
-    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
       checks: write
@@ -26,6 +26,4 @@ jobs:
       package: CodeEntropy
       test-path: tests/unit
       os: '["ubuntu-26.04"]'
-      python-versions: '["3.15"]'
-      coverage-python-version: "3.15"
       timeout-minutes: 30

.github/workflows/dependency-floors.yaml

@@ -13,25 +13,15 @@ concurrency:
 jobs:
   unit:
     name: Unit
-    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
       checks: write
       statuses: write
       pull-requests: write
     with:
       package: CodeEntropy
-      test-path: tests/unit
-      os: '["ubuntu-24.04", "macos-26", "windows-2025-vs2026"]'
-      coverage-python-version: "3.15"
-      timeout-minutes: 25
-
-  lowest-dependencies:
-    name: Lowest dependencies
-    uses: CCPBioSim/.github/.github/workflows/ci-lowest-dependencies.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
-    permissions:
-      contents: read
-    with:
+      lowest-dependencies-check: true
       test-path: tests/unit
       os: '["ubuntu-24.04", "macos-26", "windows-2025-vs2026"]'
       timeout-minutes: 25
@@ -107,19 +97,17 @@ jobs:
   docs:
     name: Docs
     needs: unit
-    uses: CCPBioSim/.github/.github/workflows/ci-docs.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-docs.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:
-      python-versions: '["3.15"]'
       timeout-minutes: 25
 
   pre-commit:
     name: Pre-commit
     needs: unit
-    uses: CCPBioSim/.github/.github/workflows/ci-pre-commit.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-pre-commit.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:
-      python-version: "3.15"
       timeout-minutes: 15

.github/workflows/pr.yaml

@@ -18,7 +18,7 @@ permissions:
 jobs:
   prepare:
     name: Prepare
-    uses: CCPBioSim/.github/.github/workflows/release-prepare.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/release-prepare.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: write
       pull-requests: write
@@ -40,7 +40,7 @@ jobs:
   website:
     name: Website
     needs: prepare
-    uses: CCPBioSim/.github/.github/workflows/release-website.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/release-website.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:
@@ -53,7 +53,7 @@ jobs:
   pypi:
     name: PyPI
     needs: prepare
-    uses: CCPBioSim/.github/.github/workflows/release-pypi.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/release-pypi.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:
@@ -65,7 +65,7 @@ jobs:
   conda:
     name: Conda
     needs: prepare
-    uses: CCPBioSim/.github/.github/workflows/release-conda.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/release-conda.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:

.github/workflows/release.yaml

@@ -10,7 +10,7 @@ permissions:
 
 jobs:
   update-license-year:
-    uses: CCPBioSim/.github/.github/workflows/maintenance-license-year.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/maintenance-license-year.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: write
       pull-requests: write

.github/workflows/update-copyright-years-in-license-file.yaml

@@ -15,7 +15,7 @@ concurrency:
 jobs:
   docs:
     name: Docs build
-    uses: CCPBioSim/.github/.github/workflows/ci-docs.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-docs.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
     with:

.github/workflows/weekly-docs.yaml

@@ -1,28 +1,29 @@
-name: Daily Unit Tests
+name: Weekly Unit Tests
 
 on:
   schedule:
-    - cron: '0 8 * * 1-5'
+    - cron: '0 8 * * 1'
   workflow_dispatch:
 
 permissions:
   contents: read
 
 concurrency:
-  group: daily-${{ github.ref }}
+  group: weekly-tests-${{ github.ref }}
   cancel-in-progress: true
 
 jobs:
   unit:
     name: Unit
-    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@116d539cf0864af72d33dce047313ca6fc624ccd # 0.4.0
+    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
     permissions:
       contents: read
       checks: write
       statuses: write
       pull-requests: write
     with:
       package: CodeEntropy
+      lowest-dependencies-check: true
       test-path: tests/unit
       os: '["ubuntu-24.04", "macos-26", "windows-2025-vs2026"]'
       coverage: false

.github/workflows/daily.yaml .github/workflows/weekly-tests.yaml.github/workflows/daily.yaml renamed to .github/workflows/weekly-tests.yaml

@@ -3,7 +3,7 @@ CodeEntropy
 
 | Category       | Badges |
 |----------------|--------|
-| **Build**      | [![PR Checks](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/pr.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/pr.yaml) [![Daily Tests](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/daily.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/daily.yaml) [![Dependency Floors](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/dependency-floors.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/dependency-floors.yaml) |
+| **Build**      | [![PR Checks](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/pr.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/pr.yaml) [![Weekly Tests](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-tests.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-tests.yaml) |
 | **Regression** | [![Weekly Regression](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-regression.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-regression.yaml) |
 | **Documentation** | [![Weekly Docs](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-docs.yaml/badge.svg)](https://github.com/CCPBioSim/CodeEntropy/actions/workflows/weekly-docs.yaml) [![Docs - Status](https://app.readthedocs.org/projects/codeentropy/badge/?version=latest)](https://codeentropy.readthedocs.io/en/latest/?badge=latest) |
 | **Citation**      | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17570721.svg)](https://doi.org/10.5281/zenodo.17570721) |

README.md

@@ -159,15 +159,12 @@ Pull Request checks include:
 - Documentation build
 - Pre-commit validation
 
-Daily workflow:
-
-- Runs automated test validation
-
 Weekly workflows:
 
+- Unit tests on Linux, macOS, and Windows, including the dependency floor checks
+  (see :ref:`dependency-policy`)
 - Full regression suite including slow tests
 - Documentation build across all Python versions
-- Dependency floor checks (see :ref:`dependency-policy`)
 
 CI also caches regression datasets to improve performance.
 
@@ -181,10 +178,10 @@ bound (floor) is the oldest release CodeEntropy is known to work with, so that i
 stays installable alongside other scientific packages. Floors are only raised
 when the code needs a newer release. Upper bounds are widened by Renovate.
 
-The ``lowest-dependencies`` job in the pull request workflow and the weekly
-``dependency-floors.yaml`` workflow check this. They check that the lowest
-allowed versions resolve to installable wheels on each platform and Python
-version, and that the unit tests pass with them installed.
+The unit jobs in the pull request and weekly workflows check this. After the
+normal tests, each job reinstalls the lowest allowed versions of the direct
+dependencies and runs the unit tests again, which checks that they resolve to
+installable wheels on each platform and Python version and that the tests pass.
 
 Run the same checks locally with `uv <https://docs.astral.sh/uv/>`_::