AutoAB/.gitignore at main · CadaHealth/AutoAB · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
# --- External binaries (fetched by scripts/install.sh) ---
geneGUI/bin/igblastn
geneGUI/bin/igblastp
geneGUI/bin/makeblastdb
geneGUI/bin/internal_data

# --- Node / Electron ---
node_modules/
electron-app/dist/
electron-app/release/
electron-app/out/
electron-app/.vite/
npm-debug.log*
.eslintcache

# --- Python ---
__pycache__/
*.py[cod]
.Python
*.egg-info/
.eggs/

# --- Pipeline outputs ---
geneGUI/outs/
outs/
build-trees-input/
clean_fasta/
clean_db_files/
trees/
*.fmt7
*.dSYM/

# Generated BLAST indexes (rebuilt from the checked-in FASTAs on first run)
geneGUI/data/Database-Files/

# --- Input / result data (never commit study data) ---
*.fasta
*.fa
*.fastq
*.fq
*.tsv
*.csv
*.xlsx
# ...but the reference databases that ship with the tool are required:
!geneGUI/data/IMGT_Human_Database/*.fasta
!geneGUI/data/IMGT_Mouse_Database/*.fasta
!geneGUI/data/internal_data/**
!geneGUI/data/optional_data/**
!backend/requirements.txt

# --- Editor / OS ---
.DS_Store
.vscode/
.idea/
*.swp
*.swo
*~
*.code-workspace