amber-codon-scanner/.github/workflows/ci.yml at main · CameronCat/amber-codon-scanner · GitHub

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name: CI

on:
  push:
    branches: [ "main", "dev" ]
    tags:
      - 'v*'
  pull_request:
    branches: [ "main" ]

jobs:
  test:
    name: Python ${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install package and dev deps
        run: |
          python -m pip install --upgrade pip
          pip install -e ".[dev]"
      - name: Run tests with coverage
        run: |
          pytest --cov=amber_codon_scanner --cov-report=xml --cov-report=term-missing
      - name: Upload coverage
        if: matrix.python-version == '3.11'
        uses: codecov/codecov-action@v4
        with:
          file: ./coverage.xml
          fail_ci_if_error: false

  publish:
    name: Publish to PyPI
    needs: test
    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
    runs-on: ubuntu-latest
    permissions:
      id-token: write
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: "3.11"
      - name: Build package
        run: |
          pip install build
          python -m build
      - name: Publish to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1