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docs: synchronize README, SYSTEM_MAP, ARCHITECTURE, OPERATIONS_MANUAL…
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chore(deps): apply safe non-breaking dependency updates
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fix(ops): return row counts dictionary in restore_sqlite.py
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fix(agents): reconcile model slots with agent config panel source of …
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fix(audit): resolve part 3 engine core, security, and transport defects
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fix(lint): eliminate explicit any in model slots and resolve useless …
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refactor(stores): harden settings store with union types, symmetric s…
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fix(stores,tests): align loopback URL resolution and update settings …
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fix: medium/ops hardening
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security: avoid XSS in root mount failure UI
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fix: ship execution layer in Docker and kill timed-out sandbox processes
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security: harden prometheus token, grafana, MCP env, sandbox defaults
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fix(types,tests): reconcile duplicate exports and remove obsolete hea…
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