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@@ -203,6 +203,18 @@ Specific examples for graph-neural-network-based particle linking and trace char
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- DTEx241B **MAGIK to Track HeLa Cells**
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- DTEx251 **[Neural Tissue Segmentation with Simulated Training Data](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx251_neural_tissue_segmentation.ipynb)** <ahref="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx251_neural_tissue_segmentation.ipynb"><imgsrc="https://colab.research.google.com/assets/colab-badge.svg"></a>
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Training a U-Net on simulated images to segment membranes and mitochondria in experimental electron microscopy images of neural tissue.
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- DTEx252 **[Particle Localization and Phase Mask Optimization](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx252_phase_mask_optimization.ipynb)** <ahref="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx252_phase_mask_optimization.ipynb"><imgsrc="https://colab.research.google.com/assets/colab-badge.svg"></a>
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Jointly optimizing an optical phase mask and a CNN to localize closely spaced particles in 3D.
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- DTEx252B **[Reproducing the Phase Mask Optimization Figures](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx252B_phase_mask_optimization_figures.ipynb)** <ahref="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx252B_phase_mask_optimization_figures.ipynb"><imgsrc="https://colab.research.google.com/assets/colab-badge.svg"></a>
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Reproducing the paper figures using the pretrained models from DTEx252.
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# Advanced Tutorials
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This section provides a list of advanced tutorials. The primary focus of these tutorials is to demonstrate the functionalities of individual modules and how they work in relative isolation, helping to provide a better understanding of them and their roles in DeepTrack2.
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