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<strong>Marques D</strong>, Fernandes C, <strong>Barbosa-Morais NL</strong>, Reis C.
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"<ahref="https://doi.org/10.1101/2025.06.16.659930" target="_blank" rel="noopener">Circadian disruption beneath the surface: a screening approach to identify actigraphy-based markers of split shift work in submariners.</a>"
"<ahref="https://doi.org/10.1101/2025.04.17.649161" target="_blank" rel="noopener">scStudio: A User-Friendly Web Application Empowering Non-Computational Users with Intuitive scRNA-seq Data Analysis.</a>"
"<ahref="https://doi.org/10.1093/nargab/lqag057" target="_blank" rel="noopener">Exploring molecular signatures of senescence with markeR, an R toolkit for evaluating gene sets as phenotypic markers.</a>"
Jardim C<sup>*</sup>, <strong>Bica M</strong><sup>*</sup>, Reis-Sobreiro M, da Mota AT, Lopes R, Pinto M, Sousa NS, Mensurado S, Boekhoff H, Scolaro T, Reugebrink M, Gonçalves-Sousa N, Kubo H, Gomes CM, Brito C, Arguello R, Leites EP, Morais VA, Silva-Santos B, <strong>Barbosa-Morais NL</strong>, Serre K.
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"<ahref="https://doi.org/10.1158/2326-6066.CIR-24-0797" target="_blank" rel="noopener">Sustained macrophage reprogramming is required for CD8 T cell-dependent long-term tumor eradication.</a>"
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<em>Cancer Immunology Research</em>, 2025 Jun 5; in press.
"<ahref="https://elifesciences.org/articles/88623" target="_blank" rel="noopener">voyAGEr, free web interface for the analysis of age-related gene expression alterations in human tissues.</a>"
"<ahref="https://doi.org/10.1261/rna.079764.123" target="_blank" rel="noopener">betAS: intuitive analysis and visualisation of differential alternative splicing using beta distributions.</a>"
"<ahref="https://www.frontiersin.org/articles/10.3389/fnins.2020.607215/full" target="_blank" rel="noopener">Unraveling Targetable Systemic and Cell-Type-Specific Molecular Phenotypes of Alzheimer's and Parkinson's Brains With Digital Cytometry.</a>"
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<em>Frontiers in Neuroscience</em>, 2020 Dec 9;14:607215.
"<ahref="https://link.springer.com/protocol/10.1007%2F978-1-0716-0301-7_10" target="_blank" rel="noopener">Interactive Alternative Splicing Analysis of Human Stem Cells Using psichomics.</a>"
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<em>Methods in Molecular Biology</em>, 2020;2117:179-205.
Munkley J, Li L, Krishnan SRG, Hysenaj G, Scott E, Dalgliesh C, Oo HZ, <strong>Maia TM</strong>, Cheung K, Ehrmann I, Livermore KE, Zielinska H, Thompson O, Knight B, McCullagh P, McGrath J, Crundwell M, Harries LW, Daugaard M, Cockell S, <strong>Barbosa-Morais NL</strong>, Oltean S, Elliott DJ.
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"<ahref="https://elifesciences.org/articles/47678" target="_blank" rel="noopener">Androgen-regulated transcription of ESRP2 drives alternative splicing patterns in prostate cancer.</a>"
<strong>de Almeida BP</strong>, Vieira AF, Paredes J, Bettencourt-Dias M, <strong>Barbosa-Morais NL</strong>.
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"<ahref="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006832" target="_blank" rel="noopener">Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome.</a>"
"<ahref="https://academic.oup.com/nar/article/47/2/e7/5114259" target="_blank" rel="noopener">psichomics: graphical application for alternative splicing quantification and analysis.</a>"
"<ahref="http://link.springer.com/article/10.1007/s00439-017-1790-y" target="_blank" rel="noopener">Alternative splicing: the pledge, the turn, and the prestige - The key role of alternative splicing in human biological systems.</a>"
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