omni-medical-suite/.gitignore at main · DrAbdulmalek/omni-medical-suite · GitHub

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# Dependencies
node_modules/
.pnp/
.pnp.js

# Build outputs
.next/
dist/
build/
*.tsbuildinfo
.turbo/

# Environment files
.env
.env.*
!.env.example
!.env.example.production
.env.local
.env.*.local
.env.standard
.env.production
.env.lite

# Secrets
*.pem
*.key
*.secret

# Database
*.db
*.db-journal
*.db-wal
*.sqlite
*.sqlite3
prisma/db/

# Python
__pycache__/
*.py[cod]
*$py.class
*.egg-info/
*.egg
.eggs/
venv/
.venv/
env/
.Python

# Virtual environments
env/
venv/
.venv/
# Throwaway venv created by .github/workflows/security-scan.yml so that pip-audit /
# safety (and their own transitive deps, e.g. safety -> nltk) can never end up inside
# the environment being audited.
.scanner-venv/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# Logs
logs/
*.log

# Uploads
uploads/
encrypted/
download/

# Testing
coverage/
.coverage
htmlcov/
.pytest_cache/

# Docker
docker-compose.override.yml

# Misc
*.bak
*.tmp
*.temp
.agent-ctx/

# Large data files (downloaded via scripts/setup_dictionaries.sh)
data/dictionaries/*.csv

# Training data database (generated at runtime)
training-data/corrections/*.db
training-data/corrections/*.jsonl
data/ocr_corrected.json
data/ocr_result.json
data/correction_dict.json
data/corrections.db
data/active_learning.db
data/backups/
data/mobile_images/

# AppImage build artifacts (local per-machine state — not committed)
# .last_build_commit is written by packages/desktop/build_appimage.sh
# and read by scripts/check_appimage_freshness.py to detect stale builds.
packages/desktop/.last_build_commit
packages/desktop/AppDir/
packages/desktop/*.AppImage
packages/desktop/*.AppImage.sha256

# ── Generated unified dictionary artifacts (regeneratable via scripts/export_unified_glossary.py) ──
# These are large merged JSON/CSV files produced by packages/medical/medical_dictionary_loader.py
# Re-generate with: python3 scripts/export_unified_glossary.py
data/dictionaries/medical_glossary_merged.json
data/dictionaries/medical_glossary_merged.csv
data/dictionaries/malek_data_terms.json
data/dictionaries/quarantined_entries.json
data/dictionaries/conflicts.json

# ── Specialty TMX dictionaries (regeneratable via scripts/process_malek_dictionaries.py) ──
# These 64MB of JSON files are produced deterministically from the malek_data
# TMX archive. Re-generate with:
#   python3 scripts/process_malek_dictionaries.py
# See docs/audits/MALEK_DICTIONARIES_AUDIT.md for the full pipeline audit.
data/dictionaries/specialty/*.json
!data/dictionaries/specialty/.gitkeep