Replace GraphBLAS with patched version

Author: vkutuev

Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.9-slim as builder
+FROM python:3.9-slim AS builder
 
 # Avoid prompts from apt
 ENV DEBIAN_FRONTEND=noninteractive
@@ -8,22 +8,27 @@ WORKDIR /app
 COPY requirements.txt /app/
 COPY deps/CFPQ_Data /app/deps/CFPQ_Data
 
-RUN apt-get update && apt-get install -y gcc python3-dev libgraphblas-dev
+RUN apt-get update && apt-get install -y \
+    python3-dev \
+      git \
+      wget \
+      make \
+      ninja-build \
+      gcc \
+      libomp-dev \
+    && wget -qO- "https://cmake.org/files/v3.19/cmake-3.19.1-Linux-x86_64.tar.gz" \
+      | tar --strip-components=1 -xz -C /usr/local
+ENV GraphBLAS_ROOT=/usr/local
+RUN cd deps \
+    && git clone --depth 1 --branch vkutuev/kron https://github.com/vkutuev/GraphBLAS.git \
+    && cmake -S ./GraphBLAS -B ./GraphBLAS/build -G Ninja -DCMAKE_INSTALL_PREFIX="$GraphBLAS_ROOT" \
+    && cmake --build ./GraphBLAS/build \
+    && cmake --install ./GraphBLAS/build
+RUN pip install --no-binary suitesparse-graphblas suitesparse-graphblas==7.4.3
 RUN pip3 install pygraphblas==5.1.8.0
 RUN pip3 install -r requirements.txt
 RUN cd deps/CFPQ_Data && python3 setup.py install
 
-FROM python:3.9-slim
-
-RUN apt update && apt install -y time git
-
-COPY --from=builder /usr/local /usr/local
-
-RUN echo 'echo Welcome to the CFPQ_PyAlgo Docker container!' >> /root/.bashrc \
-    && echo 'echo "Run \`python3 -m cfpq_cli.run_all_pairs_cflr --help\` to see the usage message."' >> /root/.bashrc \
-    && echo 'echo "Detailed documentation is available in the \`/app/docs/\` folder."' >> /root/.bashrc
-
-WORKDIR /app
 COPY . /app
 
 ENTRYPOINT ["/bin/bash"]

requirements.txt

@@ -3,7 +3,6 @@ pytest==8.0.1
 pytest-benchmark
 pytest-cov
 cfpq_data==1.0.2
-suitesparse-graphblas==8.2.1.0
 python-graphblas==2024.2.0
 pandas==2.0.3
 numpy==1.23.5