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Replace GraphBLAS with patched version #40

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Merged
gsvgit merged 1 commit into from
Sep 18, 2025
Merged

Replace GraphBLAS with patched version #40

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31 changes: 18 additions & 13 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM python:3.9-slim as builder
FROM python:3.9-slim AS builder

# Avoid prompts from apt
ENV DEBIAN_FRONTEND=noninteractive
Expand All @@ -8,22 +8,27 @@ WORKDIR /app
COPY requirements.txt /app/
COPY deps/CFPQ_Data /app/deps/CFPQ_Data

RUN apt-get update && apt-get install -y gcc python3-dev libgraphblas-dev
RUN apt-get update && apt-get install -y \
python3-dev \
git \
wget \
make \
ninja-build \
gcc \
libomp-dev \
&& wget -qO- "https://cmake.org/files/v3.19/cmake-3.19.1-Linux-x86_64.tar.gz" \
| tar --strip-components=1 -xz -C /usr/local
ENV GraphBLAS_ROOT=/usr/local
RUN cd deps \
&& git clone --depth 1 --branch vkutuev/kron https://github.com/vkutuev/GraphBLAS.git \
&& cmake -S ./GraphBLAS -B ./GraphBLAS/build -G Ninja -DCMAKE_INSTALL_PREFIX="$GraphBLAS_ROOT" \
&& cmake --build ./GraphBLAS/build \
&& cmake --install ./GraphBLAS/build
RUN pip install --no-binary suitesparse-graphblas suitesparse-graphblas==7.4.3
RUN pip3 install pygraphblas==5.1.8.0
RUN pip3 install -r requirements.txt
RUN cd deps/CFPQ_Data && python3 setup.py install

FROM python:3.9-slim

RUN apt update && apt install -y time git

COPY --from=builder /usr/local /usr/local

RUN echo 'echo Welcome to the CFPQ_PyAlgo Docker container!' >> /root/.bashrc \
&& echo 'echo "Run \`python3 -m cfpq_cli.run_all_pairs_cflr --help\` to see the usage message."' >> /root/.bashrc \
&& echo 'echo "Detailed documentation is available in the \`/app/docs/\` folder."' >> /root/.bashrc

WORKDIR /app
COPY . /app

ENTRYPOINT ["/bin/bash"]
1 change: 0 additions & 1 deletion requirements.txt
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Expand Up @@ -3,7 +3,6 @@ pytest==8.0.1
pytest-benchmark
pytest-cov
cfpq_data==1.0.2
suitesparse-graphblas==8.2.1.0
python-graphblas==2024.2.0
pandas==2.0.3
numpy==1.23.5
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