List of completed and upcoming analyses within this project

[abearab]

• Combined analysis to identify potential target genes that sensitize cells through m6A
• Analysis to highlight decitabine induced differentiation #6
• ML prediction for DAC combination therapies #5

CRISPRi-screens

• Get ScreenProcessing outputs
• Run GSEA analysis

BS-seq

• Reanalysis of public data to differential DNA hypomethylation

RNA-seq

• Differential gene expression analysis
  • The Salmon-tximport-DESeq2 pipeline #4
• Differential RNA stability analysis
  • The STAR-featureCounts-REMBRANDTS-limma pipeline #3
• Process RNA-seq datasets and integrate data across all AML cell lines
• ERV reanalysis to include all ERV in combination therapy

meRIP-seq

• ERV reanalysis to include all ERV

multi-omics

• Intersectional analysis of RNA-seq and CRISPRi screening
• Multi-Omics Factor Analysis of all data modalities #9