fix typed bug (#45)

Author: ch99l

CHANGELOG.md

@@ -4,6 +4,11 @@ This file contains all notable changes to Bambu-Pipe.
 
 ---
 
+## [v0.10.2] - 2026-09-23
+
+### Fixed
+- `--output_dir` is now typed as `String` instead of `Path`; typed `Path` params must already exist, so a new output directory failed validation when the trace, timeline, report and DAG reports (which create it first) were disabled
+
 ## [v0.10.1] - 2026-08-26
 
 ### Added

main.nf

@@ -31,7 +31,7 @@ params {
     input: Path
     genome: Path
     annotation: Path
-    output_dir: Path
+    output_dir: String
     chemistry: String?
     technology: String?
     bam_only: Boolean

nextflow.config

@@ -2,7 +2,7 @@ manifest {
     name        = 'Bambu-Pipe'
     description = 'Context-aware transcript quantification from long-read single-cell and spatial transcriptomics data'
     author      = 'Andre Sim, Chin Hao Lee, Min Hao Ling'
-    version     = 'v0.10.1'
+    version     = 'v0.10.2'
     mainScript  = 'main.nf'
     nextflowVersion = '!>=26.04.0'
 }