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v0.10.3: fastq preprocessing fixes - #47
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🟢 Approval recommended
The focused preprocessing fixes are internally consistent and correctly documented.
Review effort: Balanced
Findings: None
What changed in this PR
Updates FASTQ preprocessing correctness and prepares the v0.10.3 release.
Changes:
- Prevents shell expansion of flexiplex wildcard patterns.
- Improves adapter filtering and corrects 10x3v3/v4 adapter sequences.
- Updates release metadata and changelog.
| File | Description |
|---|---|
nextflow.config |
Bumps the pipeline version to v0.10.3. |
modules/preprocess_fastq.nf |
Safely passes flexiplex patterns and requires 10 bp adapter overlap. |
assets/10x_config/adapter_seq_config.csv |
Corrects 10x3v3/v4 adapter sequences. |
CHANGELOG.md |
Documents the v0.10.3 fixes. |
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ch99l
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Oct 1, 2026
v0.10.3: fastq preprocessing fixes (#47)
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