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Fix idr0106 to download from ftp instead of github #225

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Fix idr0106 to download from ftp instead of github #225

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b002c19
Fix idr0106 to download from ftp instead of github
will-moore Jun 23, 2026
9047807
Fix idr0079 to download from ftp instead of github
will-moore Jun 23, 2026
99912a4
Fix idr0075 to download from ftp instead of github
will-moore Jun 23, 2026
41b460f
Fix idr0052 to download from ftp instead of github
will-moore Jun 23, 2026
4adae5e
Fix Raw%20Images to Raw Images for idr0075
will-moore Jun 23, 2026
b632d7a
use .tif example client_path for idr0079 in download_urls.tsv
will-moore Jun 23, 2026
f920c7f
Revert "Fix idr0052 to download from ftp instead of github"
will-moore Jun 23, 2026
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6 changes: 3 additions & 3 deletions _data/download_urls.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ idr0110 13422206 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0110-roder
idr0109 12922361 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0109-zaritsky-melanoma uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0109-zaritsky-melanoma/20210319-ftp/140605_A375.nd2
idr0108 13425351 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0108-sabinina-nuclearporecomplex uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-NUP107/01_638i100_UVi50_Boosti150mW_x20_2C-A647-CF680_1_MMStack_Pos0.ome.tif
idr0107 13417006 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0107-morgan-hei10 uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0107-morgan-hei10/20210222-ftp/hei10 +-/hei10+-_2.12.19_plant13_slide1_image1/Composite.tif
idr0106 12689244 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0106-kubota-lunglightsheet data/idr-metadata/idr0106-kubota-lunglightsheet https://github.com/IDR/idr0106-kubota-lunglightsheet/blob/main data/idr-metadata/idr0106-kubota-lunglightsheet/experimentA/companions/Mosaic_Image.companion.ome
idr0106 12689244 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0106-kubota-lunglightsheet data/idr-metadata/idr0106-kubota-lunglightsheet/experimentA/companions https://ftp.ebi.ac.uk/pub/databases/IDR/idr0106-kubota-lunglightsheet/20210226 data/idr-metadata/idr0106-kubota-lunglightsheet/experimentA/companions/Mosaic Image_Z[00001]_L[1].ome.tiff
idr0103 12074262 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0103-coomer-hiv1fusion uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0103-coomer-hiv1fusion/20201214-ftp/R1-C1--C2-100mM2DG_100ug_Chol_JRFL_32bit.tif.ome.tif
idr0101 13457536 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0101-payne-insitugenomeseq uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0101-payne-insitugenomeseq/20210421-processed/pgp1/fov001/cell002/cell002.pattern
idr0100 11576514 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0100-capar-myelin uod/idr/metadata/idr0100-capar-myelin https://github.com/IDR/idr0100-capar-myelin/blob/master uod/idr/metadata/idr0100-capar-myelin/pattern/Sample1.pattern https://www.ebi.ac.uk/biostudies/studies/S-BIAD493
Expand All @@ -74,11 +74,11 @@ idr0083 9822151 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0083-lamers
idr0082 9846357 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0082-pennycuick-lesions uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0082-pennycuick-lesions/20200517-ftp/S11_HandE.ndpi
idr0081 9822584 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0081-georgi-adenovirus uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0081-georgi-adenovirus/20200324-owncloud/1-prePlates/Data_UZH/preScreen/HAdV-pre.HTD
idr0080 11517748 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0080-way-perturbation uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0080-way-perturbation/20200316-s3/2015_07_01_Cell_Health_Vazquez_Cancer_Broad/CRISPR_PILOT_B1/images/SQ00014610__2016-06-16T00_38_35-Measurement2/Images/Index.idx.xml
idr0079 9836950 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0079-hartmann-lateralline uod/idr/metadata/idr0079-hartmann-lateralline https://github.com/IDR/idr0079-hartmann-lateralline/blob/master uod/idr/metadata/idr0079-hartmann-lateralline/companions/experimentA/056F63395C/056F63395C.companion.ome
idr0079 9836950 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0079-hartmann-lateralline uod/idr/metadata/idr0079-hartmann-lateralline/companions https://ftp.ebi.ac.uk/pub/databases/IDR/idr0079-hartmann-lateralline/20200220-ftp uod/idr/metadata/idr0079-hartmann-lateralline/companions/experimentA/056F63395C/056F63395C_8bit_lynEGFP.tif
idr0078 10341985 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0078-mattiazziusaj-endocyticcomp uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0078-mattiazziusaj-endocyticcomp/20200707-ometiff/Sac6-tdTomato/1/1.companion.ome
idr0077 9836801 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0077-valuchova-flowerlightsheet uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0077-valuchova-flowerlightsheet/20191219-disk01/figure 01/anther staging MIP/2019-02-25 04bud 2tracks.czi
idr0076 10501751 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0076-ali-metabric uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0076-ali-metabric/20191219-ftp/METABRIC_IMC/to_public_repository/full_stacks/MB0000_1_527_fullstack.tiff
idr0075 9528933 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0075-cabirol-honeybee uod/idr/metadata/idr0075-cabirol-honeybee https://github.com/IDR/idr0075-cabirol-honeybee/blob/master uod/idr/metadata/idr0075-cabirol-honeybee/experimentA/companions/MBLipOverviewBee1.companion.ome
idr0075 9528933 Github False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0075-cabirol-honeybee uod/idr/metadata/idr0075-cabirol-honeybee/experimentA/companions https://ftp.ebi.ac.uk/pub/databases/IDR/idr0075-cabirol-honeybee/20191129-ftp/Raw Images uod/idr/metadata/idr0075-cabirol-honeybee/experimentA/companions/MicroglomeruliBee1.tif
idr0073 9798441 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0073-schaadt-immuneinfiltrates uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0073-schaadt-immuneinfiltrates/20191119-ftp_ometiff/breastCancer1.ome.tiff
idr0072 12794626 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0072-schormann-subcellref uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0072-schormann-subcellref/20210420-plates/WS_MCF10A-landmark_library_20180506_Meas_01/001001001.flex
idr0071 12231056 IDR False https://ftp.ebi.ac.uk/pub/databases/IDR/idr0071-feldman-crisprko uod/idr/filesets https://ftp.ebi.ac.uk/pub/databases/IDR uod/idr/filesets/idr0071-feldman-crisprko/20201027-companions/companions/experimentA/process/10X_A1_Tile-102.aligned.companion.ome
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