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GRAPHRAG_IMPLEMENTATION_REPORT.md

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TRACE-GC 0.4.0 — GraphRAG implementation report

Delivered project

The supplied TRACE-GC 0.3.0 project was extended in place with a bidirectional GraphRAG reference subsystem. Existing source verification, atomic semantic tasks, confidence/outcome separation, resolver, deterministic constraints, authorization, calibration/qualification, graph transactions and replay were retained. The graph is both an output of compilation and an input to future compilation.

The new upstream UpstreamGraphRAG coordinates retrieval before the existing question/semantic/resolver workflow. The downstream GraphRAGQueryService exposes evidence-backed, source-cited context over the same compiled graph. They share retrieval infrastructure but have distinct roles. Neither component has a publication capability; graph retrieval is candidate context, not an arbiter of graph truth.

This is an executable, installable reference integration with explicit external gates. It is not a production qualification, a replacement graph database, or evidence of improved real-model accuracy.

Input preservation audit

Item Verified result
Input archive TRACE-GC_Implemented_Project(1).zip
Input SHA-256 5fdb420a3d927cc6ca247f8013bdbebfb608dc18788a4ff4ef1528690fed62db
Baseline test run 197 tests: 196 passed, one external conformance test skipped
Original test files All five files byte-identical to the input archive
Original runtime modules All 25 retained; extension changes are recorded individually
Original semantic program definitions Existing top-level assignments preserved; reranking uses a separate relevance program
Original documentation and release reports Preserved under archive/v0.3/
Original record envelope 0.3.0 compatibility retained; retrieval payloads use trace-retrieval-v1

The full hash audit is in review/graphrag_baseline_audit.json. Extended original modules are trace_gc/__init__.py, trace_gc/adapter.py, trace_gc/catalog.py, trace_gc/cli.py, trace_gc/compiler.py, trace_gc/demo.py, trace_gc/ledger.py, trace_gc/plans.py, trace_gc/programs.py, trace_gc/replay.py, trace_gc/resolver.py, trace_gc/validation.py. The transaction backend, independent trust enrollment, qualification implementation and deterministic constraints were not replaced.

Material architectural changes

Existing component GraphRAG extension Integration point Why Principal risk Validation
Source verification and evidence closure Bounded canonical source + graph context compiler.py, retrieval security/integration Adds useful prior graph context without treating adjacency as proof Forged, stale or excessive context Canonical reconstruction, ACL, source withdrawal and closure tests
Question packing and exact Jev receipts Optional bounded graph-relevance program and retrieval lineage Existing pack/adapter/observation records Audits what reached the model and why Reranker silently changing truth or scope Exact response/pack binding; forged and recursive rerank rejection
Resolver and abstention Task/risk planner and finite uncertainty-triggered expansion Existing INSUFFICIENT semantic outcome and policy result Acquires more evidence only when needed Retrieval loops or answer shopping Round/cost/latency limits; saturation and review-stop tests
Authoritative snapshot/journal Read-only graph adapters and historical/temporal views Existing SQLite authority; in-memory fixtures Makes committed graph state queryable without a second writer Inconsistent snapshot or inaccessible historical content Version, source-epoch, rollback and before-source tests
Decision/provenance ledger Query, context, selection/discard and source-citation lineage Existing immutable Catalog, ledger and validation Explains retrieval-to-decision-to-commit provenance Broken or fabricated references Strict schemas, reference reconstruction and complete-bundle validation
Compiled evidence graph Downstream claim-, contradiction-, temporal- and decision-aware GraphRAG GraphRAGQueryService Supplies inspectable evidence contexts to QA/search/agents One-sided conflicts or lossy summaries mistaken for proof Conflict-pair accounting, exact source spans, historical/trust tests
Replay and research gates Alternative retrieval branches, metrics, ablations and held-out policy gate Existing replay/qualification boundaries Tests retrieval changes without rewriting original observations Benchmark leakage or unsupported performance claims Disjoint held-out selection tests; synthetic results explicitly labeled
Existing packaging and validation 108 added tests, four scenarios, 91 comparisons and 28 schemas CLI, validation runner and wheel resources Makes the integration reproducible and portable Source-only success or missing installed resources Installed-wheel execution outside the source tree

The expanded six-column matrix is in docs/20_graphrag_deltas.md. All 50 requested sections and all 25 deliverables have a location and coverage/limitation entry in docs/22_graphrag_traceability.md.

Executable retrieval capabilities

The hybrid service includes 18 channels: entity, lexical, vector, neighborhood, path, community, global, ontology, schema, relation, provenance, evidence, conflict, decision, temporal, source, similar-case and claim retrieval. Canonical candidates are deduplicated and ranked by explicit utilities rather than uncalibrated probabilities. Optional Jev relevance judgments reorder bounded candidates without rewriting their contents or publication status.

Seven graph trust classes preserve the distinction between verified provenance, provisional facts, derived artifacts, conflicts, superseded facts, historical facts and unverified context. Six query modes support balanced evidence, consensus, contradictions only, provenance only, historical and latest-valid-state retrieval. A community summary is a versioned retrieval artifact linked to original assertions and evidence, not canonical evidence.

Deny-by-default resource ACLs cover tenant, workspace, user, roles, security classification, sources, nodes, edges, decisions and schema fragments. Filtering precedes embedding or semantic-model context construction. Historical requests continue to honor current source access and tombstones. The application must supply a trusted access policy; an internal audit Catalog is not a public unauthenticated API.

Structured budgets bound hops, paths, unique nodes/edges, communities, provenance depth, decisions, source spans, context size, work, latency, candidates, rounds and semantic reranking. Known contradiction pairs are selected atomically or omitted with a warning, rather than falling back to a misleading one-sided assertion. Snapshot/status/ACL/algorithm-sensitive caches prevent stale authorized context from being reused after relevant changes.

Executed validation

Generated on 2026-09-25T08:58:36.501082+00:00 in the environment recorded in VALIDATION_REPORT.json.

Check Actual result
Full unit/integration/security suite 305 run; 304 passed; 1 skipped; 0 failures; 0 errors
Original baseline / added GraphRAG tests 197 / 108
Original adversarial design-review probes 18 of 18 rejected; none accepted
Canonicalization vectors 18 valid and 6 invalid vectors checked
Runtime schemas and embedded copies 28 matching schema pairs
Original isolated transactional lifecycle Passed
GraphRAG end-to-end scenarios Four passed
Synthetic benchmark 91 runs across seven task families; eight upstream + five downstream configurations
Installed-wheel checks CLI version, original demo, four GraphRAG scenarios, 91 comparisons and both bundle validators passed outside source tree
Live provider calls / production graph writes 0 / 0

The sole skip is the retained pinned-upstream conformance test: matching external core.py bytes were not supplied. Synthetic scenarios do execute authorized commits against isolated temporary test databases with ephemeral test keys. No private key or persistent test database is exported.

The four scenarios exercise entity identity, opposing source claims, condition-specific research claims, and uncertainty-triggered retrieval expansion. Each exports immutable records, an evidence-cited answer context and a result report. The expansion scenario performs a second decision round when additional graph context arrives, then follows the existing independently reviewed sandbox publication path. It does not bypass unqualified-policy abstention.

Results that are not established

The benchmark labels are hand-authored synthetic relevance labels. Its semantic oracle intentionally uses fixture context coverage; those decisions are not an independent estimate of a real model's accuracy. Benchmark results therefore establish retrieval measurements and pipeline wiring only. Real-model synthesis improvement, deployed calibration, scientific novelty and a controlled production pilot remain unestablished.

The tested graph adapters are the existing SQLite reference authority and in-memory snapshots. Neo4j, PostgreSQL/AGE/pgvector, PuppyGraph and RDF/SPARQL integrations are replaceable adapter designs, not shipped remote connectors. The offline embedding baseline is deterministic token hashing, with exact-version supplied vectors and embedding interfaces; no trained provider was invoked. Community retrieval uses bounded connected components, not a full hierarchical global GraphRAG indexing pipeline.

The cache stores authorized hybrid candidate results, including graph, provenance, community and vector results. A separate retrieval-plan cache and durable ANN index are documented extensions, not implemented services. The downstream interface returns structured contexts; it is not an HTTP server or an automatic prose-answer generator. The existing fixed synthesis tasks remain source support/refutation and identity, even though graph retrieval supports broader relation types.

Latency checks are cooperative; remote adapters need their own cancellation and I/O timeouts. Context-size accounting uses a conservative UTF-8 byte estimate, not billed provider tokens. Retrieval cost is logical work, not measured currency. These limits and deployment acceptance gates are documented rather than presented as production guarantees.

Run the project

python -m pip install .
trace-gc --version
python tools/run_validation.py
trace-gc graphrag-demo --output examples/graphrag/scenarios
trace-gc graphrag-benchmark --output benchmarks/graphrag
python examples/graphrag/query_example.py
trace-gc validate examples/graphrag/scenarios/D_uncertainty_expansion/bundle.json

Installing the standalone wheel provides the Python runtime, CLI and embedded schemas. Use the project ZIP for documentation, test sources, policy files, editable Mermaid diagrams, benchmark results and scenario exports.

Files to read first

README.md is the entry point. docs/01_architecture.md is the canonical architecture. docs/16_retrieval_planner_budget_cache.md specifies planning, limits, expansion and caching. docs/17_hybrid_and_downstream_graphrag.md covers retrieval strategies and the downstream API. docs/18_graphrag_security.md covers security boundaries. docs/19_graphrag_replay_evaluation.md covers replay, metrics and experimental method. docs/20_graphrag_deltas.md contains the requested change matrix. docs/21_graphrag_research_roadmap.md separates prior work, implemented integration, hypotheses and deployment gates. docs/22_graphrag_traceability.md maps the request and deliverables.

The editable diagram sources are diagrams/architecture.mmd, diagrams/graphrag.mmd and diagrams/retrieval_expansion.mmd; pre-rendered diagram images are not claimed. Generated execution evidence is in VALIDATION_REPORT.json, VALIDATION_LOG.txt, PACKAGING_REPORT.json, examples/graphrag/scenarios/ and benchmarks/graphrag/. MANIFEST.json records delivered file sizes and hashes, excluding its own bytes to avoid recursive hashing.