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JonesRobM/README.md

Robert M. Jones, PhD

Applied AI Scientist Physics-grounded machine learning for defence and national security.

Theoretical Physicist Specialising in nonlinear and chiral light–matter interactions, and still maintaining scientific software in that field.

ORCID · Google Scholar · LinkedIn


Selected work

Applied AI — evaluation, tooling, uncertainty

Project Summary
PhysBound MCP server that lints RF and physical-layer calculations against hard physical limits (Shannon, Friis, radar range). Catches LLM physics hallucinations. On PyPI and the MCP Registry; CI + coverage.
RagOnAStick Retrieval evaluation harness for UK MoD Joint Doctrine publications. Seven retriever/chunking configurations benchmarked (recall@k, MRR, nDCG) with MLflow logging. No generation — just measurement.
Chrono-Sentinel Transformer-based time-series anomaly detection on the Numenta Anomaly Benchmark, with Monte Carlo Dropout uncertainty quantification and calibration analysis.

Scientific software — simulation and physics-constrained ML

Project Summary
Sapphire Post-processing environment for the structural characterisation of metallic nanoparticles and nanoalloys from MD trajectories — CNA signatures, coordination and aGCN, chemical ordering, change-point detection of melting transitions. Lead author; published in Faraday Discussions 242 (2023), pip install sapphire-nano, DOI-archived, CI + docs + executable tutorials.
Lumina Rust framework for electromagnetic simulation of nanostructures via the Coupled Dipole Approximation. GPU-accelerated, O(N)-memory GMRES, Ewald-summed periodic systems, SHG/THG. 136 tests.
Metamaterials_PINN Physics-informed neural networks for electromagnetic problems in metamaterials — Maxwell-constrained training with reproducible configs and tests.

Also public: energy-demand forecasting across 10 US regions (LSTM/GRU/TFT vs gradient-boosted baselines), and unmaintained PhD-era code for HHG data processing, DFT tooling and nanoparticle dynamics.


Background

  • Applied AI Scientist, Whitespace (2026–present) — applied ML for defence and national-security problems.
  • Data Scientist, The Alan Turing Institute (2025–2026) — ML and statistical modelling on HPC for AI research, and radio-frequency digital signal processing in defence and national-security contexts.
  • Postdoctoral Research Associate, King's College London (2023–2025) — chiral and nonlinear light–matter interactions; computational and analytical frameworks for quantum-chemistry prediction.

Education: PhD Physics, KCL (2022) · MSc Non-Equilibrium Systems, KCL (2019) · MPhys Theoretical Physics, Leeds (2018)

I build ML systems that respect physical constraints: simulation, uncertainty quantification, and evaluation tooling that tells you when a model is wrong.


Technical

Languages: Python (PyTorch), Rust, C++, Fortran, SQL Scientific computing: MPI, CUDA, OpenMP, HPC schedulers Engineering: Docker, CI/CD (GitHub Actions), pytest, MLflow, packaging and release (PyPI), Linux, LaTeX

Pinned Loading

  1. RagOnAStick RagOnAStick Public

    Retrieval evaluation harness for UK MoD Joint Doctrine — seven retriever/chunking configurations benchmarked on recall@k, MRR, nDCG. No generation, just measurement

    Python

  2. physbound physbound Public

    Physical Layer Linter — MCP server that validates RF link budgets, Shannon capacity, and noise floors against hard physical limits

    Python 2

  3. Metamaterials_PINN Metamaterials_PINN Public

    Physics-informed neural networks for electromagnetic problems in metamaterials — Maxwell-constrained training with reproducible configs

    Jupyter Notebook 5 2

  4. Sapphire Sapphire Public

    Post-processing environment for structural characterisation of metallic nanoparticles and nanoalloys from MD trajectories — pip install sapphire-nano

    Jupyter Notebook 1

  5. Chrono-Sentinel Chrono-Sentinel Public

    Transformer-based time-series anomaly detection on the Numenta benchmark, with Monte Carlo Dropout uncertainty quantification and calibration analysis

    Jupyter Notebook

  6. Lumina Lumina Public

    Rust framework for electromagnetic simulation of nanostructures via the Coupled Dipole Approximation — GPU-accelerated, O(N) memory, periodic Ewald summation, SHG/THG

    Rust