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Mar. 4, 2026: Issues with cgcg due to gravis, library for creating graphical networks, needing earlier setuptools version. It should be resolved in the next zol build (sometime this week hopefully), but a quick solution is to just downgrade setuptools:
# with the zol conda environment activated
pip install setuptools==77.0.3
Sep. 24, 2025: In v1.6.9 - minimal database downloading results in issues in zol - please download the full set of databases or use the -ld option when setting up databases using setup_annotation_dbs.py. Also if using cgc, please provide a / at the end of the output directory, this causes issues if running it via Docker. Both issues will be patched in the next release.
cgcgdue to gravis, library for creating graphical networks, needing earlier setuptools version. It should be resolved in the next zol build (sometime this week hopefully), but a quick solution is to just downgrade setuptools:-ldoption when setting up databases usingsetup_annotation_dbs.py. Also if using cgc, please provide a/at the end of the output directory, this causes issues if running it via Docker. Both issues will be patched in the next release.