Process completed with exit code 1.

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

Process completed with exit code 1.

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

Process completed with exit code 1.

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

cibuildwheel: Command set -euo pipefail

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Process completed with exit code 1.

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在，使用它；否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.

NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026

NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026

NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026

NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026