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Build Wheels for Sequenzo #309

Build Wheels for Sequenzo

Build Wheels for Sequenzo #309

Manually triggered May 22, 2026 11:01
Status Cancelled
Total duration 11m 36s
Artifacts 6

python-app.yml

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58 errors, 65 warnings, and 5 notices
Build windows-latest Py3.11
Process completed with exit code 1.
Build windows-latest Py3.11
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.11
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.11
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.9
Process completed with exit code 1.
Build windows-latest Py3.9
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.9
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.9
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.10
Process completed with exit code 1.
Build windows-latest Py3.10
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.10
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.10
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build macos-latest Py3.9
Process completed with exit code 1.
Build macos-latest Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-latest Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-latest Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build windows-latest Py3.13
Process completed with exit code 1.
Build windows-latest Py3.13
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.13
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.13
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.12
Process completed with exit code 1.
Build windows-latest Py3.12
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.12
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build windows-latest Py3.12
cibuildwheel: Command # All DLL discovery and delvewheel invocation is handled inside
Build macos-15-intel Py3.10
Process completed with exit code 1.
Build macos-15-intel Py3.10
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.10
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.10
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.12
Process completed with exit code 1.
Build macos-15-intel Py3.12
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.12
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.12
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.11
Process completed with exit code 1.
Build macos-15-intel Py3.11
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.11
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.11
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.9
Process completed with exit code 1.
Build macos-15-intel Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.9
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-15-intel Py3.13
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Build macos-latest Py3.11
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Build macos-15-intel Py3.14
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Build macos-15-intel Py3.14
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Build macos-latest Py3.12
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Build macos-latest Py3.12
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Build macos-latest Py3.12
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-latest Py3.12
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build Wheels for Sequenzo
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Build macos-latest Py3.14
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Build macos-latest Py3.14
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Build macos-latest Py3.14
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-latest Py3.10
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Build macos-latest Py3.10
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Build macos-latest Py3.13
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Build macos-latest Py3.13
The operation was canceled.
Build macos-latest Py3.13
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build macos-latest Py3.13
cibuildwheel: Command ['/bin/sh', '-c', '# 根据架构设置正确的库路径\nCURRENT_ARCH=$(uname -m)\necho "=== Testing on $CURRENT_ARCH ==="\n\n# 检测架构并设置正确的 libomp 路径\nif [ "$CURRENT_ARCH" == "x86_64" ]; then\n # Intel macOS\n EXPECTED_LIBOMP_PATH="/usr/local/opt/libomp/lib"\nelse\n # Apple Silicon macOS \n EXPECTED_LIBOMP_PATH="/opt/homebrew/opt/libomp/lib"\nfi\n\n# 如果预期路径存在,使用它;否则使用环境变量中的路径\nif [ -d "$EXPECTED_LIBOMP_PATH" ]; then\n ACTUAL_LIBOMP_PATH="$EXPECTED_LIBOMP_PATH"\n echo "Using architecture-specific libomp path: $ACTUAL_LIBOMP_PATH"\nelse\n ACTUAL_LIBOMP_PATH="$LIBOMP_PATH"\n echo "Using environment LIBOMP_PATH: $ACTUAL_LIBOMP_PATH"\nfi\n\n# 设置库路径\nexport DYLD_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_LIBRARY_PATH"\nexport DYLD_FALLBACK_LIBRARY_PATH="$ACTUAL_LIBOMP_PATH:$DYLD_FALLBACK_LIBRARY_PATH"\n\necho "Python version: $(python --version)"\necho "Final DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"\n\n# 验证 libomp 文件\nif [ -d "$ACTUAL_LIBOMP_PATH" ]; then\n echo "libomp directory contents:"\n ls -la "$ACTUAL_LIBOMP_PATH" || echo "Cannot list libomp directory"\n \n if [ -f "$ACTUAL_LIBOMP_PATH/libomp.dylib" ]; then\n echo "libomp.dylib architecture:"\n file "$ACTUAL_LIBOMP_PATH/libomp.dylib" || echo "Cannot check libomp architecture"\n else\n echo "WARNING: libomp.dylib not found at $ACTUAL_LIBOMP_PATH/libomp.dylib"\n fi\nelse\n echo "ERROR: libomp directory not found: $ACTUAL_LIBOMP_PATH"\nfi\n\n# Check test environment\necho "Test architecture: $(uname -m)"\necho "Python version: $(python --version)"\n\n# Find and inspect the installed wheel\necho ""\necho "=== Checking installed sequenzo package ==="\npython -c "import sequenzo, os; print(f\'Sequenzo location: {sequenzo.__file__}\')" || true\n\n# Try to find bundled dylibs\npython -c "\nimport sequenzo, os, glob\npkg_dir = os.path.dirname(sequenzo.__file__)\ndylibs_dir = os.path.join(pkg_dir, \'.dylibs\')\nif os.path.exists(dylibs_dir):\n print(f\'[OK] .dylibs directory found: {dylibs_dir}\')\n libs = glob.glob(os.path.join(dylibs_dir, \'*.dylib\'))\n if libs:\n print(f\'Bundled libraries: {libs}\')\n else:\n print(\'[WARNING] .dylibs directory is empty\')\nelse:\n print(\'[WARNING] .dylibs directory not found - wheel may not be properly bundled\')\n" || true\n\necho ""\necho "=== Testing Sequenzo import ==="\npython - <<\'PY\'\nimport importlib.util\nimport sys\nimport os\nimport numpy as np\n\n# Try to import sequenzo\ntry:\n import sequenzo\n print(\'[OK] Sequenzo import successful\')\nexcept ImportError as e:\n print(f\'[ERROR] Failed to import sequenzo: {e}\')\n sys.exit(1)\n\n# Check C++ clustering extensions (clustering)\nmod = importlib.util.find_spec(\'sequenzo.clustering.clustering_c_code\')\nif mod:\n print(\'[OK] Clustering C++ extensions module spec found\')\n try:\n import sequenzo.clustering.clustering_c_code\n print(\'[OK] Clustering C++ extensions loaded successfully\')\n except ImportError as e:\n print(f\'[WARNING] Clustering C++ extensions found but failed to load: {e}\')\n if \'kmpc\' in str(e) or \'omp\' in str(e):\n print(\'[INFO] This appears to be an OpenMP linking issue\')\n print(\'[INFO] The wheel may need libomp to be installed on the system\')\nelse:\n print(\'[WARNING] Clustering C++ extensions not found\')\n\n# Check dissimilarity measures\ntry:\n from sequenzo.dissimilarity_measures import c_code\n print(\'[OK] Dissimilarity measures C++ extensions (c_code) loaded successfully\')\n \n # Test specific C++ classes\n for class_name in [\'OMdistance\', \'OMspellDistance\', \'DHDdistance\', \'LCPdistance\', \'dist2matrix\']:\n if hasattr(c_code, class_name):\n print(f\'[OK] {class_name} class available\')\n \nexcept ImportError as e:\n print(f\'[WARNING] Dissimilarity measures C++ extensions (c_code) failed to load: {e}\')\n\n# Check Cython modules\ncython_modules = [\n
Build ubuntu-latest Py3.10
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.11
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build windows-latest Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.9
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build windows-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build ubuntu-latest Py3.11
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build ubuntu-latest Py3.9
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.10
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build windows-latest Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build ubuntu-latest Py3.12
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.9
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build ubuntu-latest Py3.14
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.14
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.13
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build windows-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build ubuntu-latest Py3.13
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build ubuntu-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.12
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4, ilammy/msvc-dev-cmd@v1. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build windows-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.10
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-15-intel Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.12
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-15-intel Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.11
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-15-intel Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.11
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.9
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-15-intel Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.9
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-15-intel Py3.14
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.12
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.12
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.14
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.14
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.14
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.10
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.10
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.13
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Build macos-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build macos-latest Py3.13
cibuildwheel: Invalid skip selector: 'pp*'. This selector matches a group that wasn't enabled. Enable it using the `enable` option or remove this selector. This selector will have no effect.
Build windows-latest Py3.11
NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026
Build windows-latest Py3.9
NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026
Build windows-latest Py3.10
NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026
Build windows-latest Py3.13
NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026
Build windows-latest Py3.12
NOTICE: windows-latest requests are being redirected to windows-2025-vs2026 by June 15, 2026

Artifacts

Produced during runtime
Name Size Digest
wheels-ubuntu-latest-3.10 Expired
3.21 MB
sha256:279f837d5e0193a315959193573fbafd953f3156569969d03204e762ff128faf
wheels-ubuntu-latest-3.11 Expired
3.24 MB
sha256:6d13baa0aab5bddb9715246abac1e812297436054a6587684d6cf5d78907e0d8
wheels-ubuntu-latest-3.12 Expired
3.31 MB
sha256:92ec73eef6ce3c604c1c54c4d2d99ebea94fcd76d3d8e737c9b016c3741e123f
wheels-ubuntu-latest-3.13 Expired
3.29 MB
sha256:6747869953a69fb861ade2bdbebcec2a2c755fd32a2daf67966036c8b254df95
wheels-ubuntu-latest-3.14 Expired
3.28 MB
sha256:2d5d0815aaa8ed137c47d4cc97573a6f854582d8c9a5fda8fc217f76f8f69491
wheels-ubuntu-latest-3.9 Expired
3.21 MB
sha256:c4760ccf6f4456f9234b47eabe07cf894c39d17e828b4942240dacb64e766f4a