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Study Papers: AI Skill for Active Research Paper Reading

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Agent Skill License: MIT No runtime dependencies

Study Papers is an installable AI Agent Skill that turns a research paper into an interactive, prediction-first study session. Instead of summarizing the paper all at once, it progressively reveals questions, experimental designs, figures, results, and interpretations so the learner reasons before seeing each answer.

It is designed for scientific paper reading, academic research study, figure analysis, active recall, retrieval practice, spaced repetition, and critical evaluation.

Install with one repository URL

Give this instruction to Codex or another AI agent that can install Agent Skills:

Install the study-papers skill from https://github.com/Loffee5422/study-papers-skill/tree/main/skills/study-papers

For Codex's bundled skill installer:

python3 ~/.codex/skills/.system/skill-installer/scripts/install-skill-from-github.py \
  --url https://github.com/Loffee5422/study-papers-skill/tree/main/skills/study-papers

The skill becomes available on the next turn. Invoke it explicitly with $study-papers, or let Codex select it when you ask to study a paper interactively.

What it does

Most AI paper tools answer, “What does this paper say?” Study Papers instead asks, “What would you predict before seeing what the authors did?”

  • Cascading reveal: question → design → prediction → data → interpretation → critique → next experiment
  • Figure-first reasoning: treats each major figure, experiment, or argument as a learning unit
  • Time-based depth: Snapshot, Core, Deep, or a custom time budget
  • Visible progress: displays the current checkpoint, reveal stage, and remaining work
  • Memory-first retrieval: asks for reconstruction before reopening the paper
  • Scientific critique: separates observed evidence, author claims, learner predictions, and alternative explanations
  • Paper compression: produces a compact contribution, evidence-chain, limitation, and connection note
  • Spaced recall: offers later retrieval sessions for durable understanding

Choose a study depth

Level Typical time Coverage
Snapshot 10–15 min Orientation, 1–2 decisive evidence units, main limitation, final reconstruction
Core 30–45 min Central evidence chain, standard reveal loop, retrieval, compression note
Deep 60–90+ min All major evidence, methods and assumptions, alternatives, repeated retrieval, spaced recall
Custom Your budget Highest-value evidence fitted to the available time, with omissions stated

Time estimates vary with paper length, complexity, and prior knowledge.

See progress while studying

Depth: Core (~30–45 min)
Progress: [████░░░░░░] 4/9 checkpoints
Now: Figure 2 of 4 — Data (stage 3/6)
Remaining: 2 evidence units · final reconstruction · compression

The route only advances when the checkpoint's learning criterion is met. Skipped material is labeled separately from learned material, and changing depth recalculates the plan transparently.

Example prompts

Use $study-papers to guide me through this attached paper. I have 15 minutes.
Use $study-papers in Core mode. Hide each result until I make a prediction.
Use $study-papers to quiz me on this paper from memory, then repair only my gaps.
Use $study-papers for a Deep study of this theoretical paper. Focus on assumptions and counterexamples.

How the learning loop works

Survey → Question → Predict → Reveal → Compare → Critique → Retrieve later

For empirical papers, the loop centers on experiments and figures. For theoretical, mathematical, or review papers, it adapts to claims, assumptions, derivations, evidence, implications, and counterexamples.

Requirements and compatibility

  • An AI agent that supports the SKILL.md Agent Skills convention
  • Access to the paper as a PDF, attachment, URL, or extracted text
  • No runtime dependencies, API keys, accounts, or external services required by the skill itself

The repository uses a path-addressable layout so an AI agent can install the skill directly from the GitHub tree URL.

Evidence-informed design

The workflow draws on:

These sources motivate the learning mechanics; they do not imply that this particular skill has been independently validated as an educational intervention.

Repository layout

study-papers-skill/
├── README.md
├── README.zh-CN.md
├── llms.txt
└── skills/
    └── study-papers/
        ├── SKILL.md
        └── agents/
            └── openai.yaml

Frequently asked questions

Is this a paper summarizer?

No. It can end with a compact paper note, but its primary job is to make the learner predict, interpret, critique, and retrieve the paper's argument rather than passively receive a summary.

Can it study a paper in ten minutes?

Yes. Snapshot mode prioritizes the paper's central question, decisive evidence, main limitation, and one final reconstruction. It explicitly leaves lower-priority material out.

Does it work with PDFs?

Yes, when the host AI agent can read the attached or linked PDF. The skill itself remains independent of a specific PDF tool.

Does it work outside biomedical research?

Yes. The empirical workflow fits experimental papers, while the alternate reasoning loop supports theoretical, mathematical, and review papers.

How is progress calculated?

Progress is checkpoint-based, not an unreliable estimate of pages read. Orientation, selected evidence units, retrieval, and compression each have explicit completion criteria.

Contributing

Focused improvements are welcome. See CONTRIBUTING.md.

License

MIT License. See LICENSE.

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AI skill for active research-paper study using cascading reveal, prediction, retrieval practice, critique, and spaced recall.

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