optotagging

Code for Analysing Optotagged Neuropixel Data from the Allen Institute.

Using contrastive emebddings of extracellular waveforms to predict cell type with ground truth data

Data

The allen institute optotaggging data can be found here: https://allensdk.readthedocs.io/en/latest/_static/examples/nb/ecephys_optotagging.html

https://portal.brain-map.org/explore/circuits/visual-behavior-neuropixels

and the tutorial notebook downloaded from this page: https://allensdk.readthedocs.io/en/latest/visual_coding_neuropixels.html