Code Ocean capsule - MOSuite - differential expression analysis

v5.0

Emit a merged, contrast-prefixed DEG table (deg/DEG_Analysis.csv) alongside the existing MOO output, for compatibility with downstream tools such as OMIX-GSEA-Preranked-Legacy that expect a flat DEG table (#9, @TJoshMeyer).
Sync Code Ocean app panel parameter descriptions with MOSuite package documentation for MOSuite v0.4.1 (#7, @phoman14).
Improved the Code Ocean parameter UI for the diff counts capsule (#3, @phoman14).
Use MOSuite v0.3.2. (#4, @kelly-sovacool)

The MOSuite package is now available in code/MOSuite. (#2)
Use MOSuite v0.3.1.
Set default contrasts column, contrast values, and covariates column names based on NIDAP 1.0 training data.

Standardize parameters across MOSuite capsules.
Fix: remove regex_moo parameter from configuration. multiOmicDataSet input files are now required to follow the standardized naming pattern (.*\.rds$).
Use MOSuite v0.3.0.