ci: add gha workflows

Author: kelly-sovacool

.github/workflows/auto-format.yml

@@ -0,0 +1,46 @@
+name: auto-format
+
+on:
+  workflow_dispatch:
+  pull_request:
+
+env:
+  GH_TOKEN: ${{ github.token }}
+
+permissions:
+  contents: write
+  pull-requests: write
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  auto-format:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+        if: github.event_name == 'pull_request'
+        with:
+          fetch-depth: 0
+          ref: ${{ github.head_ref }}
+      - uses: actions/checkout@v4
+        if: github.event_name != 'pull_request'
+        with:
+          fetch-depth: 0
+          ref: ${{ github.ref_name }}
+
+      - name: git config
+        run: |
+          git config --global user.name "github-actions[bot]"
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+
+      - name: Format R code with air
+        uses: rstudio/shiny-workflows/format-r-code@v1
+
+      - name: commit & push
+        run: |
+          git add .
+          git commit -m "ci: 🤖 auto-format" || echo "nothing to commit"
+          git push || echo "nothing to push"

.github/workflows/mosuite-techdev-project.yml

@@ -0,0 +1,38 @@
+name: TechDev-project
+
+on:
+  issues:
+    types:
+      - opened
+  pull_request:
+    types:
+      - opened
+
+permissions:
+  issues: write
+  pull-requests: write
+  contents: read
+
+jobs:
+  add-to-project:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Generate a token
+        id: generate-token
+        if: ${{ inputs.github-token == '' }}
+        uses: actions/create-github-app-token@v2
+        with:
+          app-id: ${{ vars.CCBR_BOT_APP_ID }}
+          private-key: ${{ secrets.CCBR_BOT_PRIVATE_KEY }}
+          owner: CCBR
+
+      - uses: actions/add-to-project@v1.0.2
+        with:
+          project-url: https://github.com/orgs/CCBR/projects/17
+          github-token: ${{ steps.generate-token.outputs.token }}
+
+      - name: add to MOSuite project
+        uses: actions/add-to-project@v1.0.2
+        with:
+          project-url: https://github.com/orgs/CCBR/projects/32
+          github-token: ${{ steps.generate-token.outputs.token }}

.github/workflows/test.yml

@@ -0,0 +1,29 @@
+name: test
+
+on:
+  push:
+    branches: [ main, dev ]
+  pull_request:
+    branches: [ main, dev ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Parse environment.json and set Docker image
+        id: docker_image
+        run: |
+          IMAGE=$(jq -r '.base_image' .codeocean/environment.json)
+          IMAGE=${IMAGE//codeocean/nciccbr}
+          echo "image=$IMAGE" >> $GITHUB_OUTPUT
+          echo "Using Docker image: $IMAGE"
+
+      - name: Run tests in Docker
+        run: |
+          docker run --rm \
+            -v ${{ github.workspace }}:/workspace \
+            -w /workspace \
+            ${{ steps.docker_image.outputs.image }} \
+            Rscript tests/testthat.R

.github/workflows/user-projects.yml

@@ -1,4 +1,4 @@
-name: Add to personal projects
+name: user-projects
 
 on:
   issues:
@@ -7,10 +7,17 @@ on:
   pull_request:
     types:
       - assigned
+
 permissions:
-  issues: read
-  pull-requests: read
+  issues: write
+  pull-requests: write
+
 jobs:
   add-to-project:
-    uses: CCBR/.github/.github/workflows/auto-add-user-project.yml@v0.1.0
-    secrets: inherit
+    runs-on: ubuntu-latest
+    steps:
+      - uses: CCBR/actions/user-projects@main
+        with:
+          app-id: ${{ vars.CCBR_BOT_APP_ID }}
+          app-private-key: ${{ secrets.CCBR_BOT_PRIVATE_KEY }}
+          token-owner: "CCBR"