Update configuration (#2950)

Co-authored-by: Deepak <deepakunni3@users.noreply.github.com>

Author: cthoyt

.github/workflows/build.yml

@@ -25,7 +25,6 @@ jobs:
 
       - name: Create local changes
         run: |
-          python -m pip install -r requirements.txt
           make
 
       - name: Commit files

.github/workflows/obo-test.yml

@@ -24,7 +24,8 @@ jobs:
 
       - name: Install requirements
         run: |
-          python3 -m pip install -r requirements.txt
+          python3 -m pip install --upgrade pip setuptools wheel
+          python3 -m pip install "tox<4.0.0"
 
       - name: Run tests
         run: |

Makefile

@@ -183,10 +183,6 @@ build:
 build/ontologies:
 	mkdir -p $@
 
-# reboot the JVM for Py4J
-reboot:
-	bash ./util/reboot.sh
-
 # This version of ROBOT includes features for starting Py4J
 # This will be changed to ROBOT release once feature is released
 #.PHONY: build/robot.jar
@@ -201,22 +197,6 @@ build/robot-foreign.jar: | build
 	curl -o $@ -Lk \
 	https://build.obolibrary.io/job/ontodev/job/robot/job/562-feature/lastSuccessfulBuild/artifact/bin/robot.jar
 
-# Generate the initial dashboard results file
-# ALWAYS make sure nothing is running on port 25333
-# Then boot Py4J gateway to ROBOT on that port
-reports/dashboard.csv: registry/ontologies.yml | \
-reports/robot reports/principles build/ontologies build/robot.jar build/robot-foreign.jar
-	make reboot
-	./util/principles/dashboard.py $< $@ --big false
-
-reports/big-dashboard.csv: reports/dashboard.csv
-	make reboot
-	./util/principles/dashboard.py registry/ontologies.yml $@ --big true
-
-# Combine the dashboard files
-reports/dashboard-full.csv: reports/dashboard.csv reports/big-dashboard.csv registry/ontologies.yml
-	./util/principles/sort_tables.py $^ $@
-
 # Generate the HTML grid output for dashboard
 reports/dashboard.html: reports/dashboard-full.csv
 	./util/create-html-grid.py $< $@

build.sh

@@ -1,4 +1,4 @@
-#!/usr/bin/env python3
+#!/usr/bin/env -S uv run --script
 
 import csv
 import sys