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uo: update license to CC BY 4.0 and add usages (#2933)
* uo: update license to CC BY 4.0 and add usages The UO repository's LICENSE.md is CC BY 4.0, but this registry entry still said CC BY 3.0 (and README.md/uo-odk.yaml said CC BY 2.0). The maintainers have settled on CC BY 4.0 and the ontology header now declares dcterms:license https://creativecommons.org/licenses/by/4.0/, so the registry needs to match or the Open check fails on a license mismatch. Also adds a usages block for FP09. The three listed users all demonstrably reference UO terms: OBI, the HUPO-PSI mass spectrometry CV, and STATO. * Standardize uo.md metadata formatting Run 'python -m obofoundry.standardize_metadata' so the usages block matches the canonical key ordering enforced by TestStandardizedYaml. * Update ontology/uo.md Co-authored-by: Deepak <deepakunni3@users.noreply.github.com> * Quote UO usage example description containing a colon The unquoted colon in the dashboard example description broke YAML parsing in extract-metadata.py (make test). Quoting matches the output of obofoundry.standardize_metadata. Claude-Session: https://claude.ai/code/session_01C8W1pJ4TkQ3eeaoEdQeUL8 --------- Co-authored-by: Deepak <deepakunni3@users.noreply.github.com>
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‎ontology/uo.md‎

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@@ -11,8 +11,8 @@ description: Metrical units for use in conjunction with PATO
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domain: phenotype
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homepage: https://github.com/bio-ontology-research-group/unit-ontology
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license:
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label: CC BY 3.0
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url: http://creativecommons.org/licenses/by/3.0/
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label: CC BY 4.0
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url: https://creativecommons.org/licenses/by/4.0/
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preferredPrefix: UO
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products:
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- id: uo.owl
@@ -23,6 +23,27 @@ publications:
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title: 'The Units Ontology: a tool for integrating units of measurement in science'
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repository: https://github.com/bio-ontology-research-group/unit-ontology
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tracker: https://github.com/bio-ontology-research-group/unit-ontology/issues
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usages:
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- description: UO has been used in various OBO ontologies, including the Ontology for Biomedical Investigations (OBI), The Statistical Methods Ontology (STATO), and HUGO-PSI Mass spectrometry ontology (MS).
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examples:
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- description: 'List of ontologies using at least one UO term (See section entitled "Info: Which ontologies use it?")'
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url: http://dashboard.obofoundry.org/dashboard/uo/dashboard.html
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- description: List of ontologies using the term "length unit" (See section entitled "Ontologies that use the Class")
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url: https://ontobee.org/ontology/UO?iri=http://purl.obolibrary.org/obo/UO_0000001
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type: owl_import
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user: (multiple)
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- description: The Ontology for Biomedical Investigations (OBI) uses UO terms to specify the units of measurement values recorded in investigations.
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type: ontology
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user: http://obi-ontology.org/
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- description: The HUPO-PSI mass spectrometry controlled vocabulary (PSI-MS) uses UO terms as the units of the quantitative terms it defines for the mzML and related PSI data standards.
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publications:
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- id: https://www.ncbi.nlm.nih.gov/pubmed/23482073
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title: The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
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type: ontology
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user: https://www.psidev.info/
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- description: STATO, the statistical methods ontology, uses UO terms to type the units of the statistical measures and parameters it defines.
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type: ontology
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user: http://stato-ontology.org/
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activity_status: active
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---
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