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Merged
deepakunni3 merged 1 commit into from
Oct 2, 2026
Merged

Update OBO foundry metadata #2955

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34 changes: 32 additions & 2 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7213,9 +7213,9 @@ ontologies:
id: uo
layout: ontology_detail
license:
label: CC BY 3.0
label: CC BY 4.0
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
url: http://creativecommons.org/licenses/by/3.0/
url: https://creativecommons.org/licenses/by/4.0/
ontology_purl: http://purl.obolibrary.org/obo/uo.owl
preferredPrefix: UO
products:
Expand All @@ -7231,6 +7231,36 @@ ontologies:
repository: https://github.com/bio-ontology-research-group/unit-ontology
title: Units of measurement ontology
tracker: https://github.com/bio-ontology-research-group/unit-ontology/issues
usages:
- description: UO has been used in various OBO ontologies, including the Ontology
for Biomedical Investigations (OBI), The Statistical Methods Ontology (STATO),
and HUGO-PSI Mass spectrometry ontology (MS).
examples:
- description: 'List of ontologies using at least one UO term (See section entitled
"Info: Which ontologies use it?")'
url: http://dashboard.obofoundry.org/dashboard/uo/dashboard.html
- description: List of ontologies using the term "length unit" (See section entitled
"Ontologies that use the Class")
url: https://ontobee.org/ontology/UO?iri=http://purl.obolibrary.org/obo/UO_0000001
type: owl_import
user: (multiple)
- description: The Ontology for Biomedical Investigations (OBI) uses UO terms to
specify the units of measurement values recorded in investigations.
type: ontology
user: http://obi-ontology.org/
- description: The HUPO-PSI mass spectrometry controlled vocabulary (PSI-MS) uses
UO terms as the units of the quantitative terms it defines for the mzML and
related PSI data standards.
publications:
- id: https://www.ncbi.nlm.nih.gov/pubmed/23482073
title: The HUPO proteomics standards initiative- mass spectrometry controlled
vocabulary
type: ontology
user: https://www.psidev.info/
- description: STATO, the statistical methods ontology, uses UO terms to type the
units of the statistical measures and parameters it defines.
type: ontology
user: http://stato-ontology.org/
- activity_status: active
contact:
email: jmcl@ebi.ac.uk
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44 changes: 41 additions & 3 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -10122,9 +10122,9 @@
"id": "uo",
"layout": "ontology_detail",
"license": {
"label": "CC BY 3.0",
"label": "CC BY 4.0",
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
"url": "http://creativecommons.org/licenses/by/3.0/"
"url": "https://creativecommons.org/licenses/by/4.0/"
},
"ontology_purl": "http://purl.obolibrary.org/obo/uo.owl",
"preferredPrefix": "UO",
Expand All @@ -10150,7 +10150,45 @@
],
"repository": "https://github.com/bio-ontology-research-group/unit-ontology",
"title": "Units of measurement ontology",
"tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues"
"tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues",
"usages": [
{
"description": "UO has been used in various OBO ontologies, including the Ontology for Biomedical Investigations (OBI), The Statistical Methods Ontology (STATO), and HUGO-PSI Mass spectrometry ontology (MS).",
"examples": [
{
"description": "List of ontologies using at least one UO term (See section entitled \"Info: Which ontologies use it?\")",
"url": "http://dashboard.obofoundry.org/dashboard/uo/dashboard.html"
},
{
"description": "List of ontologies using the term \"length unit\" (See section entitled \"Ontologies that use the Class\")",
"url": "https://ontobee.org/ontology/UO?iri=http://purl.obolibrary.org/obo/UO_0000001"
}
],
"type": "owl_import",
"user": "(multiple)"
},
{
"description": "The Ontology for Biomedical Investigations (OBI) uses UO terms to specify the units of measurement values recorded in investigations.",
"type": "ontology",
"user": "http://obi-ontology.org/"
},
{
"description": "The HUPO-PSI mass spectrometry controlled vocabulary (PSI-MS) uses UO terms as the units of the quantitative terms it defines for the mzML and related PSI data standards.",
"publications": [
{
"id": "https://www.ncbi.nlm.nih.gov/pubmed/23482073",
"title": "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary"
}
],
"type": "ontology",
"user": "https://www.psidev.info/"
},
{
"description": "STATO, the statistical methods ontology, uses UO terms to type the units of the statistical measures and parameters it defines.",
"type": "ontology",
"user": "http://stato-ontology.org/"
}
]
},
{
"activity_status": "active",
Expand Down
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