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feat: add opendde docs #197

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feat: add opendde docs #197

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06eaf88
add opendde docs and missing protenixv2
otterein Aug 13, 2026
31a4efa
docs: move protenix-v2 entries to #199
Aug 20, 2026
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11 changes: 10 additions & 1 deletion source/python-api/api-reference/fold.rst
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Expand Up @@ -13,9 +13,15 @@ Interface
:undoc-members:


Models
Models
------

.. autoclass:: openprotein.fold.OpenDDEModel
:members:

.. autoclass:: openprotein.fold.OpenDDEAbagModel
:members:

.. autoclass:: openprotein.fold.ProtenixModel
:members:

Expand Down Expand Up @@ -49,6 +55,9 @@ Models
Results
-------

.. autoclass:: openprotein.fold.OpenDDEConfidence
:members:

.. autoclass:: openprotein.fold.ESMFold2Confidence
:members:

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1 change: 1 addition & 0 deletions source/rest-api/fold.rst
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Expand Up @@ -11,6 +11,7 @@ Currently, we support the following models:
- **AlphaFold2**: Open-sourced Alphafold 2 implementation using ColabFold. `GitHub link <https://github.com/sokrypton/ColabFold>`__, `Reference <https://www.nature.com/articles/s41592-022-01488-1>`__. Licensed under `MIT <https://choosealicense.com/licenses/mit/>`__.
- **Boltz-2, Boltz-1x, Boltz-1**: Open-source Boltz models. `GitHub link <https://github.com/jwohlwend/boltz>`__, `Boltz-1 reference <https://www.biorxiv.org/content/10.1101/2024.11.19.624167v1>`__, `Boltz-2 <https://www.biorxiv.org/content/10.1101/2025.06.14.659707v1>`__. Licensed under `MIT <https://choosealicense.com/licenses/mit/>`__.
- **Protenix**: Open-source Protenix model. `GitHub link <https://github.com/bytedance/Protenix>`_, `Reference <https://www.biorxiv.org/content/early/2026/02/22/2026.02.05.703733.1>`_. Licensed under `Apache-2.0 <https://choosealicense.com/licenses/apache-2.0/>`_.
- **OpenDDE, OpenDDE-abag**: Open-source OpenDDE all-atom co-folding models, predicting protein, DNA, RNA, ligand and ion complexes in a single structure. ``opendde-abag`` is tuned on antibody-antigen complexes. `GitHub link <https://github.com/aurekaresearch/OpenDDE>`__, `Reference <https://arxiv.org/abs/2607.03787>`__. Licensed under `Apache-2.0 <https://choosealicense.com/licenses/apache-2.0/>`__.
- **RosettaFold-3**: Open-source RosettaFold-3 model. `GitHub link <https://github.com/RosettaCommons/modelforge>`__, `Reference <https://www.biorxiv.org/content/10.1101/2025.08.14.670328v2>`__. Licensed under `BSD-3 <https://choosealicense.com/licenses/bsd-3-clause/>`__.

Endpoints
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