CLIO

Author: SigmaJahan

README.md

@@ -144,11 +144,17 @@ Apache-2.0. See [`defaultplusplus/LICENSE`](defaultplusplus/LICENSE).
 
 ## Citation
 
+DEFault++ is unpublished research. If you use this code, please cite
+the repository directly:
+
 ```bibtex
-@inproceedings{jahan2026hierarchical,
-  title={Hierarchical Fault Diagnosis with FPG-Based Explainability for Transformers},
-  author={Jahan, Sigma and others},
-  booktitle={NeurIPS},
-  year={2026}
+@software{defaultplusplus,
+  title  = {{DEFault++}: Hierarchical Fault Diagnosis and Runtime Feature
+            Extraction for HuggingFace Transformers},
+  author = {Jahan, Sigma},
+  year   = {2026},
+  url    = {https://github.com/SigmaJahan/DEFaultplusplus-Transformer-Debugging},
+  version = {0.2.0},
+  note   = {Software repository; manuscript in preparation.}
 }
 ```

defaultplusplus/RESEARCH.md

@@ -681,11 +681,17 @@ reserved subpackages (`diagnosis/`, `processing/`, `pretrained/`,
 
 Apache-2.0 (`LICENSE`).
 
+DEFault++ is unpublished research. If you use this code, please cite
+the repository directly:
+
 ```bibtex
-@inproceedings{jahan2026hierarchical,
-  title={Hierarchical Fault Diagnosis with FPG-Based Explainability for Transformers},
-  author={Jahan, Sigma and others},
-  booktitle={TBD},
-  year={2026}
+@software{defaultplusplus,
+  title  = {{DEFault++}: Hierarchical Fault Diagnosis and Runtime Feature
+            Extraction for HuggingFace Transformers},
+  author = {Jahan, Sigma},
+  year   = {2026},
+  url    = {https://github.com/SigmaJahan/DEFaultplusplus-Transformer-Debugging},
+  version = {0.2.0},
+  note   = {Software repository; manuscript in preparation.}
 }
 ```

defaultplusplus/hierarchical_graph_category_rootcause/README.md

@@ -60,7 +60,7 @@ L_total = L_detect + alpha * L_category + lambda * L_rootcause + beta * L_contra
 | `losses.py` | Detection (weighted CE), category (CE), root-cause (CE), intra-family contrastive |
 | `train.py` | `load_data` (with killed-column merge), `train_one_fold`, `evaluate_one_fold`, `run_experiment` |
 | `evaluate.py` | Runs all 4 ablation variants, generates plots, saves JSON results |
-| `plotting.py` | NeurIPS-quality figures: training dynamics, confusion, ROC, explanation heatmaps |
+| `plotting.py` | Publication-quality figures: training dynamics, confusion, ROC, explanation heatmaps |
 
 ## Outputs