personalDataPath_bidsconvert_example.m

function cfg = personalDataPath_bidsconvert_example(varargin)

% function that contains local data path, is ignored in .gitignore
% This function is an example!! You should make your own
% personalDataPath_bidsconvert.m where you fill in the correct
% repositories.
% This personalDataPath_bidsconvert.m is ignored in .gitignore and will
% never be visible online! 

if ~isempty(varargin{1})
    if isstruct(varargin{1})
        
        if sum(contains(fieldnames(varargin{1}),'sub_labels'))
            if contains(varargin{1}.sub_labels,'RESP')
                
                % SPES
                foldername = input('Choose SystemPlus-folder: testomgeving, RESPect_spes_scratch, RESPect_chronic_ECoG_trc: ','s');
                if strcmp(foldername,'testomgeving')
                    cfg(1).proj_dirinput = '\folder\to\ieeg-files\testomgeving\patients\';
                elseif strcmp(foldername,'RESPect_spes_scratch')
                    cfg(1).proj_dirinput = '\folder\to\ieeg-files\RESPect_spes_scratch\patients\';
                elseif strcmp(foldername,'RESPect_chronic_ECoG_trc')
                    cfg(1).proj_dirinput = '\folder\to\ieeg-files\RESPect_chronic_ECoG_trc\patients\';
                else
                    error('Foldername is not recognized')
                end
            end
            
            cfg(2).proj_dirinput = '\folder\to\ieeg-files\chronic_ECoG\';
            cfg(1).proj_diroutput = '\folder\to\BIDS-files\chronic_ECoG\';
            cfg(2).proj_diroutput = '\folder\to\BIDS-files\CCEP\'; % optional: this could remain empty
            
        elseif contains(varargin{1}.sub_labels,'REC2Stim')            % REC2Stim

            cfg(1).proj_dirinput = '\folder\to\ieeg-files\REC2Stim\patients\';
            cfg(2).proj_dirinput = '\folder\to\BIDS-files\REC2Stimstudy\';
            cfg(1).proj_diroutput = '\folder\to\BIDS-files\REC2Stimstudy\';
        
        elseif contains(varargin{1}.sub_labels,'PRIOS')            % prios study

            cfg(1).proj_dirinput = '\folder\to\ieeg-files\PRIOS_study\patients';
            cfg(2).proj_dirinput = '\folder\to\BIDS-files\PRIOS_study\';
            cfg(1).proj_diroutput = '\folder\to\BIDS-files\PRIOS_study\';
            
        end
        pat = [input('What is the PAT-folder in micromed database? [PAT_XXX] ','s'),'\'];
        cfg(1).pathname = fullfile(cfg(1).proj_dirinput,pat);        
        
    end
end


if contains(fieldnames(cfg),'no_fieldtrip')
    cfg.fieldtrip_folder  = '\folder\to\fieldtrip\';
    % copy the private folder in fieldtrip to somewhere else
    cfg.fieldtrip_private = '\folder\to\fieldtrip_private\';
    %%add those later to path to avoid errors with function 'dist'
    rmpath(cfg.fieldtrip_folder)
    rmpath(cfg.fieldtrip_private)
else
    fieldtrip_folder  = '\folder\to\fieldtrip\';
    % copy the private folder in fieldtrip to somewhere else
    fieldtrip_private = '\folder\to\fieldtrip_private\';
end

jsonlab_folder    = '\folder\to\jsonlab\';
addpath(fieldtrip_folder)
addpath(fieldtrip_private)
addpath(jsonlab_folder)
ft_defaults


end