Name		Name	Last commit message	Last commit date
00Birds_trinity_and_blast_loop2.sh		00Birds_trinity_and_blast_loop2.sh
Genome Wide Association analysis (GWAS) — angus 6.0 documentation.pdf		Genome Wide Association analysis (GWAS) — angus 6.0 documentation.pdf
Genome_Assembly_Final_Pipeline_and_Results.pdf		Genome_Assembly_Final_Pipeline_and_Results.pdf
Megan6		Megan6
Next Generation Sequencing spreadsheet - T.tsv		Next Generation Sequencing spreadsheet - T.tsv
README.md		README.md
Ssuis.md		Ssuis.md
Variant calling pipeline for a mammalian genome — angus 6.0 documentation.pdf		Variant calling pipeline for a mammalian genome — angus 6.0 documentation.pdf
Virome_Turnstones.html		Virome_Turnstones.html
bioinformatics-one-liners.md		bioinformatics-one-liners.md
blast_wrapper.sh		blast_wrapper.sh
deeplearningbook.pdf		deeplearningbook.pdf
heca		heca
important_links		important_links
makePBS.py		makePBS.py
mapping_statistics.sh		mapping_statistics.sh
orientRNAs.pl		orientRNAs.pl
synonymy.pl		synonymy.pl
trinity_workshop_part1.pdf		trinity_workshop_part1.pdf
virodio.sh		virodio.sh
virome_fish		virome_fish
vk_16S-analysis_dada2.md		vk_16S-analysis_dada2.md
vk_ReadStats.sh		vk_ReadStats.sh
vk_combine_CSVs.py		vk_combine_CSVs.py
vk_dada2_tutorial.R		vk_dada2_tutorial.R
vk_download_sequences_from_ncbi.sh		vk_download_sequences_from_ncbi.sh
vk_edit_astro_tree.R		vk_edit_astro_tree.R
vk_install_run_provean_notes.md		vk_install_run_provean_notes.md
vk_maker_genome_annotation.md		vk_maker_genome_annotation.md
vk_merge_table.py		vk_merge_table.py
vk_metagenomics_pipeline.txt		vk_metagenomics_pipeline.txt
vk_nanopore_assembly.sh		vk_nanopore_assembly.sh
vk_phylogenies.pl		vk_phylogenies.pl
vk_refBasedAssembly_pilon.sh		vk_refBasedAssembly_pilon.sh
vk_reference_based_assembly.sh		vk_reference_based_assembly.sh
vk_runTaxonomizedBLAST.pl		vk_runTaxonomizedBLAST.pl
vk_taxid_dist.pl		vk_taxid_dist.pl
vk_useful_ngs_oneliners		vk_useful_ngs_oneliners
vk_variant_effect_analysis.md		vk_variant_effect_analysis.md
vk_virus_discovery_pipeline.sh		vk_virus_discovery_pipeline.sh

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