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Update ROBOT command in Makefile for unique facets
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‎dumps.Makefile‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -84,7 +84,7 @@ $(RAW_DUMPS_DIR)/inferred_annotation.owl: $(FINAL_DUMPS_DIR)/owlery.owl $(RAW_DU
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# Infers unique facets for the virtual fly brain ontology using the ROBOT inference engine.
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$(RAW_DUMPS_DIR)/unique_facets.owl: $(FINAL_DUMPS_DIR)/owlery.owl $(RAW_DUMPS_DIR)/vfb-config.yaml
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$(call log, $@, java -jar $(SCRIPTS_DIR)/infer-annotate.jar $^ $(UNIQUE_FACETS_ANNOTATION) $@ true)
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$(call log, $@, java $(ROBOT_ARGS) -jar $(SCRIPTS_DIR)/infer-annotate.jar $^ $(UNIQUE_FACETS_ANNOTATION) $@ true)
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# Downloads the VFB configuration file and saves it to disk.
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$(RAW_DUMPS_DIR)/vfb-config.yaml:
@@ -177,4 +177,4 @@ pdb_sideloads: $(SIDE_LOADING_ONTS) | $(CSV_IMPORTS)
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pdb_csvs: $(FINAL_DUMPS_DIR)/pdb.owl | $(CSV_IMPORTS)
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$(call log, $@, java $(ROBOT_ARGS) -jar $(OWL2NEOCSV) $< "$(VFB_CONFIG)" $(CSV_IMPORTS) false $(INFER_ANNOTATE_RELATION))
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@echo "=== Print Timer Logs ==="
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@cat $(LOG_FILE)
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@cat $(LOG_FILE)

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