Revert "update Dockerfile to increase memory allocation for ROBOT; update Makefile to change reasoner from ELK to HERMIT for OWL file generation"

This reverts commit 7a5c1cd.

Author: Robbie1977

Dockerfile

@@ -24,7 +24,7 @@ RUN mkdir $WORKSPACE
 
 ###### ROBOT ######
 ENV ROBOT v1.8.3
-ENV ROBOT_ARGS -Xmx100G -Djava.util.concurrent.ForkJoinPool.common.parallelism=1
+ENV ROBOT_ARGS -Xmx20G -Djava.util.concurrent.ForkJoinPool.common.parallelism=1
 ARG ROBOT_JAR=https://github.com/ontodev/robot/releases/download/$ROBOT/robot.jar
 ENV ROBOT_JAR ${ROBOT_JAR}
 RUN wget $ROBOT_JAR -O $WORKSPACE/robot.jar && \

dumps.Makefile

@@ -76,7 +76,7 @@ $(RAW_DUMPS_DIR)/construct_%.owl: $(RAW_DUMPS_DIR)/%.ttl
 # Generates an OWL file from multiple TTL files, infers annotations and relations,
 # reduces the ontology, annotates it, and saves it to disk.
 $(RAW_DUMPS_DIR)/construct_all.owl: $(RAW_DUMPS_DIR)/all.ttl
-	$(call log, $@, $(ROBOT) merge -i $< reason --reasoner HERMIT --axiom-generators "SubClass EquivalentClass ClassAssertion" --exclude-tautologies structural relax annotate --ontology-iri "http://virtualflybrain.org/data/VFB/OWL/raw/all.owl" convert -f owl -o $@ $(STDOUT_FILTER))
+	$(call log, $@, $(ROBOT) merge -i $< reason --reasoner ELK --axiom-generators "SubClass EquivalentClass ClassAssertion" --exclude-tautologies structural relax annotate --ontology-iri "http://virtualflybrain.org/data/VFB/OWL/raw/all.owl" convert -f owl -o $@ $(STDOUT_FILTER))
 
 # Infers annotations and relations for the virtual fly brain ontology using the ROBOT inference engine.
 $(RAW_DUMPS_DIR)/inferred_annotation.owl: $(FINAL_DUMPS_DIR)/owlery.owl $(RAW_DUMPS_DIR)/vfb-config.yaml