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Default use_whole_cell_only to true; hide mask smoothing and Cellpose preprocessing params #282

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Default use_whole_cell_only to true; hide mask smoothing and Cellpose preprocessing params

Default use_whole_cell_only to true; hide mask smoothing and Cellpose preprocessing params #282

Triggered via pull request October 8, 2026 01:19
@mikemckamikemcka
opened #47
mikemcka:feat/whole-cell-default-hide-advanced
Status Success
Total duration 1m 24s
Artifacts 1

linting.yml

on: pull_request
pre-commit
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pre-commit
pytest
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pytest
nf-core
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nf-core
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3 warnings and 3 notices
pytest
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
pre-commit
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
nf-core
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: ./setup-nextflow/subaction, actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d, actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808, pietrobolcato/action-read-yaml@1.1.0. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
pytest
"The ubuntu-latest label will migrate to Ubuntu 26 beginning October 19, 2026. For more information, see https://github.com/actions/runner-images/issues/14748"
pre-commit
"The ubuntu-latest label will migrate to Ubuntu 26 beginning October 19, 2026. For more information, see https://github.com/actions/runner-images/issues/14748"
nf-core
"The ubuntu-latest label will migrate to Ubuntu 26 beginning October 19, 2026. For more information, see https://github.com/actions/runner-images/issues/14748"

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sha256:43fd5a65038e55ea32c86fc3ca64b55344f3bd77aed462d2fe0e9341962c421b