Cellmeasurement and spatialvis compatibility fixes for QuPath 0.6

Author: mcmero

modules/local/cellmeasurement/main.nf

@@ -3,7 +3,7 @@ process CELLMEASUREMENT {
     label 'process_multi'
 
     conda "${moduleDir}/environment.yml"
-    container "ghcr.io/wehi-soda-hub/cellmeasurement:0.2.2"
+    container "ghcr.io/wehi-soda-hub/cellmeasurement:0.2.3"
 
     input:
     tuple val(meta),

modules/local/cellmeasurement/tests/main.nf.test.snap

@@ -7,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.geojson:md5,28a0af972df5df592168e8885e316dbd"
+                        "test.geojson:md5,b2a67eb97b16930f44a27fe69f3695e3"
                     ]
                 ],
                 "1": [
@@ -18,7 +18,7 @@
                         {
                             "id": "test"
                         },
-                        "test.geojson:md5,28a0af972df5df592168e8885e316dbd"
+                        "test.geojson:md5,b2a67eb97b16930f44a27fe69f3695e3"
                     ]
                 ],
                 "versions": [
@@ -30,7 +30,7 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.4"
         },
-        "timestamp": "2025-12-18T15:49:46.147461716"
+        "timestamp": "2026-01-14T15:51:12.924931369"
     },
     "cellmeasurement - with cell expansion and skip measurements": {
         "content": [

modules/local/segmentationreport/main.nf

@@ -3,7 +3,7 @@ process SEGMENTATIONREPORT {
     label 'process_high'
 
     conda "${moduleDir}/environment.yml"
-    container 'ghcr.io/wehi-soda-hub/spatialvis:0.1.6'
+    container 'ghcr.io/wehi-soda-hub/spatialvis:0.1.7'
 
     input:
     tuple val(meta),

modules/local/segmentationreport/tests/main.nf.test.snap

@@ -7,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.html:md5,2998b52ac02383625943edc09bd2c073"
+                        "test.html:md5,b4c687315b34d357a254d19013cb6731"
                     ]
                 ],
                 "1": [
@@ -24,7 +24,7 @@
                         {
                             "id": "test"
                         },
-                        "test.html:md5,2998b52ac02383625943edc09bd2c073"
+                        "test.html:md5,b4c687315b34d357a254d19013cb6731"
                     ]
                 ],
                 "versions": [
@@ -36,7 +36,7 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.4"
         },
-        "timestamp": "2025-10-14T11:21:40.493507137"
+        "timestamp": "2026-01-16T15:05:11.9648729"
     },
     "segmentationreport - stub": {
         "content": [