Bump version and add citation

Author: mcmero

README.md

@@ -6,7 +6,7 @@
 </h1>
 
 [![GitHub Actions CI Status](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/ci.yml/badge.svg)](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/ci.yml)
-[![GitHub Actions Linting Status](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/linting.yml/badge.svg)](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/linting.yml)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
+[![GitHub Actions Linting Status](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/linting.yml/badge.svg)](https://github.com/WEHI-SODA-Hub/sp_segment/actions/workflows/linting.yml)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.17103183-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.17103183)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
@@ -223,8 +223,7 @@ If you would like to contribute to this pipeline, please see the [contributing g
 
 ## Citations
 
-<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->
-<!-- If you use WEHI-SODA-Hub/sp_segment for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->
+If you use WEHI-SODA-Hub/sp_segment for your analysis, please cite it using the following doi: [10.5281/zenodo.17103183](https://doi.org/10.5281/zenodo.17103183)
 
 <!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->
 

nextflow.config

@@ -393,7 +393,7 @@ manifest {
     description     = """Cell segmentation and downstream analysis pipeline for the COMET and MIBI spatial platforms"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.04.2'
-    version         = '0.2.0'
+    version         = '0.3.0'
     doi             = ''
 }