buscar/pyproject.toml at main · WayScience/buscar · GitHub

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[build-system]
requires = ["setuptools>=64", "setuptools-scm>=8"]
build-backend = "setuptools.build_meta"

[dependency-groups]
dev = [
  "pre-commit>=4.6.2",
  "pytest>=8.4.1",
  "pytest-cov>=6.0.0",
  "ruff>=0.8.1",
  "twine>=6.1.0"
]

[project]
name = "buscar"
description = "A Python framework for prioritizing compounds in high-content imaging drug screening using single-cell profiles."
authors = [{ name = "Erik Serrano", email = "erik.serrano@cuanschutz.edu" }]
readme = "README.md"
license = "BSD-3-Clause"
requires-python = ">=3.10,<3.15"
dynamic = ["version"]
keywords = ["single-cell", "drug-screening", "image-profiling", "phenotypic-screening"]
classifiers = [
  "Development Status :: 3 - Alpha",
  "Intended Audience :: Science/Research",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Topic :: Scientific/Engineering :: Image Processing"
]
dependencies = [
  "beartype>=0.22.9,<0.23.0",
  "numpy>=2.2.5,<3.0.0",
  "polars>=1.29.0,<2.0.0",
  "pot>=0.9.5,<0.10.0",
  "scikit-learn>=1.6.1,<2.0.0",
  "scipy>=1.15.3,<2.0.0",
  "statsmodels>=0.14.4,<0.16.0",
  "umap-learn>=0.5.9",
  "pycytominer>=1.2.3,<2.0.0"
]

[project.urls]
Homepage = "https://github.com/WayScience/buscar"
Repository = "https://github.com/WayScience/buscar"
Issues = "https://github.com/WayScience/buscar/issues"

[tool.coverage.report]
show_missing = true
skip_covered = true

[tool.coverage.run]
branch = true
source = ["buscar"]

[tool.pytest.ini_options]
addopts = "-ra"
testpaths = ["tests"]

[tool.ruff]
target-version = "py310"
line-length = 88

[tool.ruff.lint]
select = ["E", "F", "I"]

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.setuptools]
package-dir = { "" = "src" }

[tool.setuptools.packages.find]
where = ["src"]
include = ["buscar*"]

[tool.setuptools_scm]
version_scheme = "no-guess-dev"
local_scheme = "no-local-version"