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Bump the pre-commit-hooks group with 2 updates (#39)
* Bump the pre-commit-hooks group with 2 updates Bumps the pre-commit-hooks group with 2 updates: [https://github.com/tox-dev/pyproject-fmt](https://github.com/tox-dev/pyproject-fmt) and [https://github.com/astral-sh/ruff-pre-commit](https://github.com/astral-sh/ruff-pre-commit). Updates `https://github.com/tox-dev/pyproject-fmt` from v2.28.1 to 2.29.4 - [Release notes](https://github.com/tox-dev/pyproject-fmt/releases) - [Commits](tox-dev/pyproject-fmt@v2.28.1...v2.29.4) Updates `https://github.com/astral-sh/ruff-pre-commit` from v0.16.4 to 0.16.8 - [Release notes](https://github.com/astral-sh/ruff-pre-commit/releases) - [Commits](astral-sh/ruff-pre-commit@v0.16.4...v0.16.8) --- updated-dependencies: - dependency-name: https://github.com/tox-dev/pyproject-fmt dependency-version: 2.29.4 dependency-type: direct:production dependency-group: pre-commit-hooks - dependency-name: https://github.com/astral-sh/ruff-pre-commit dependency-version: 0.16.8 dependency-type: direct:production dependency-group: pre-commit-hooks ... Signed-off-by: dependabot[bot] <support@github.com> * updates to pass ci --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: d33bs <ekgto445@gmail.com>
1 parent 11c7183 commit 8973c6f

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‎.pre-commit-config.yaml‎

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@@ -9,7 +9,7 @@ repos:
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- id: check-yaml
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- id: detect-private-key
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- repo: https://github.com/tox-dev/pyproject-fmt
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rev: "v2.28.1"
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rev: "v2.29.4"
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hooks:
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- id: pyproject-fmt
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- repo: https://github.com/citation-file-format/cffconvert
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- id: yamllint
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exclude: \.pre-commit-config\.yaml
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: "v0.16.4"
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rev: "v0.16.8"
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hooks:
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- id: ruff-format
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- id: ruff-check

‎README.md‎

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@@ -127,7 +127,7 @@ register_directory(
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"data/plates/",
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"default",
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"myproject.images",
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glob="**/*.ome.tiff", # default is **/*.ome.zarr
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glob="**/*.ome.tiff", # default is **/*.ome.zarr
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)
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```
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@@ -154,7 +154,9 @@ grid, so TIFF-only registrations have no chunk rows to write; skipping the
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table avoids an unused table and unnecessary writes:
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```python
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register_store("data/experiment.ome.tiff", "default", "myproject.images", chunk_index_table=None)
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register_store(
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"data/experiment.ome.tiff", "default", "myproject.images", chunk_index_table=None
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)
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```
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→ details: [`docs/src/catalog-setup.md`](docs/src/catalog-setup.md)
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register_profile_table(
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"data/profiles.parquet",
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"default",
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"myproject.profiles", # conventional: <experiment>.profiles
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"myproject.profiles", # conventional: <experiment>.profiles
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)
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```
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‎pyproject.toml‎

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[project]
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name = "iceberg-bioimage"
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description = "A format-agnostic framework for cataloging and querying bioimaging data (Zarr, OME-TIFF) with Apache Iceberg"
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description = """\
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A format-agnostic framework for cataloging and querying bioimaging data (Zarr, OME-TIFF) with Apache Iceberg\
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"""
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readme = "README.md"
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keywords = [
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"bioimage",
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"Programming Language :: Python :: 3.12",
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"Programming Language :: Python :: 3.13",
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"Programming Language :: Python :: 3.14",
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"Programming Language :: Python :: 3.15",
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"Topic :: Scientific/Engineering :: Bio-Informatics",
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]
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dynamic = [ "version" ]

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