This repository was archived by the owner on Jun 2, 2026. It is now read-only.

Name		Name	Last commit message	Last commit date
.snakemake		.snakemake
envs		envs
logs		logs
scripts		scripts
workflow		workflow
.gitignore		.gitignore
README.md		README.md
config.yaml		config.yaml
config_no_parents.yaml		config_no_parents.yaml
dag.svg		dag.svg

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a snakemake workflow for annotation of SVs from Bionano data

need to install:

R
- R-nanotatoR(made through conda)
Perl

For now only fors on Linux

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A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

annotation bionano genome-analysis optical r smap structural-variation

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