StdVisualModel/hpc_solve_modelsTARGET_NOCROSS.sh at master · WinawerLab/StdVisualModel · GitHub

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#! /bin/bash -e
#SBATCH --job-name=StdModel_target_noCross
#SBATCH -a 1-48 # these numbers are read in to SLURM_ARRAY_TASK_ID
#SBATCH --nodes=1
#SBATCH --cpus-per-task=20
#SBATCH --mem=48GB
#SBATCH --time=48:00:00
#SBATCH --output=/scratch/%u/StdVisualModel/logs/%x_out-%a.txt
#SBATCH --error=/scratch/%u/StdVisualModel/logs/%x_error-%a.txt
#SBATCH --mail-user=%u@nyu.edu
#SBATCH --mail-type=END #email me when it crashes or better, ends

module load matlab/2021a

matlab <<EOF

s0_add_paths
doCross=false;
target='target';
start_idx=1;
% if choose_model = 'all', the total number of array jobs is 48 - if only one model is selected 12 array jobs
choose_model='all';
s2_fit_all_cluster
EOF