Issues

• Missing fusion output files

  documentationenhancement
  ablab/IsoQuant#438 · Filter by author anderdnavarro opened on Oct 22, 2026
  3

• analysis method, single sample or multi samples

  ablab/IsoQuant#422 · Filter by author suyanan opened on Aug 26, 2026
  5

• Barcode collision in multi-sample single-cell runs

  enhancementsingle-cell
  ablab/IsoQuant#388 · Filter by author zczali4403 opened on Apr 16, 2026
  1

• Q: best practices?

  enhancementperformance
  ablab/IsoQuant#357 · Filter by author sklages opened on Dec 17, 2025
  5

• Output transcript usage matrix.

  enhancement
  ablab/IsoQuant#352 · Filter by author liuzhenyu-yyy opened on Dec 2, 2025
  1

  

• Visualize.py with --find_genes

  visualizer
  ablab/IsoQuant#351 · Filter by author GiliWolf opened on Nov 25, 2025
  1

• Add an option to output the transcript/gene counts for all the available options for a single run

  enhancement
  ablab/IsoQuant#339 · Filter by author mpage21 opened on Sep 11, 2025
  1

• antisense classification for ONT direct RNAseq data

  algorithmenhancementquestion
  ablab/IsoQuant#255 · Filter by author baishengjun opened on Nov 4, 2024
  4

• readthrough transcripts

  enhancement
  ablab/IsoQuant#101 · Filter by author rsalz opened on Jul 17, 2023
  1