Skip to content
CI & CD

Improve _match_common_residues() #360

Sign in to view logs

Improve _match_common_residues()

Improve _match_common_residues() #360

Workflow file for this run

.github/workflows/main.yml at a5958ec
---
name: "CI & CD"
on:
workflow_dispatch:
push:
branches:
- "main"
pull_request:
release:
types:
- published
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
env:
PY_VERSION: "3.11" # Keep in sync with minimum version in pyproject.toml
jobs:
lint:
name: Check code style
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PY_VERSION }}
- name: Install package and linting dependencies
run: pip install .[lint]
- name: Check code formatting
run: ruff format --diff
- name: Lint code base
run: ruff check
- name: Check docstring formatting
run: numpydoc lint src/peppr/*.py
- name: Check typing
run: mypy src
build:
name: Build distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PY_VERSION }}
- name: Install build frontend
run: pip install build
- name: Build distribution
run: python -m build .
- uses: actions/upload-artifact@v4
with:
name: distribution
path: ./dist/*
test:
name: Run tests
needs:
- build
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/download-artifact@v4
with:
name: distribution
path: dist
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PY_VERSION }}
- name: Install peppr and test dependencies
# Indirection to install the wheel from glob pattern with extra dependencies
run: |
WHL=(dist/*.whl)
pip install $WHL"[tests]"
- name: Run tests
run: pytest
docs:
name: Build documentation
needs:
- build
runs-on: ubuntu-latest
env:
TMPDIR: /tmp/
steps:
- uses: actions/checkout@v4
- uses: actions/download-artifact@v4
with:
name: distribution
path: dist
- uses: actions/setup-python@v5
with:
python-version: ${{ env.PY_VERSION }}
- name: Install peppr and documentation dependencies
run: |
WHL=(dist/*.whl)
pip install $WHL"[docs]"
- name: Build documentation
run: sphinx-build docs build/docs
- uses: actions/upload-pages-artifact@v3
with:
path: build/docs/
publish-dist:
name: Publish distribution to GitHub Releases and PyPI
if: github.event_name == 'release' && github.event.action == 'published'
needs:
- lint
- build
- test
- docs
environment:
name: publish
url: https://pypi.org/p/peppr
permissions:
contents: write
id-token: write
runs-on: ubuntu-latest
steps:
- uses: actions/download-artifact@v4
with:
name: distribution
path: dist
- name: Upload to GitHub Releases
uses: softprops/action-gh-release@v2.2.1
with:
files: dist/*
- name: Upload to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
publish-docs:
name: Publish documentation to GitHub Releases and documentation website
if: github.event_name == 'release' && github.event.action == 'published'
needs:
- lint
- build
- test
- docs
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
permissions:
contents: write
pages: write
id-token: write
runs-on: ubuntu-latest
steps:
- uses: actions/download-artifact@v4
with:
name: github-pages
path: dist
- name: Rename packaged docs
run: mv dist/artifact.tar dist/docs.tar
- name: Upload to GitHub Releases
uses: softprops/action-gh-release@v2.2.1
with:
files: dist/docs.tar
- name: Upload to GitHub Pages
uses: actions/deploy-pages@v4