Issues

• IAB loading on binder get stucked

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#330 · Filter by author fabiodepa opened on Jan 11, 2021
  1

• pull some content and definitions into a new "Getting Started" chapter

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#326 · Filter by author gregcaporaso opened on Feb 20, 2020

• error Sequence mapping and clustering

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#320 · Filter by author theokirkland opened on Jan 3, 2020

• Section 2.2.6.1: evaluate_search uses current_queries variable name?

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#319 · Filter by author ryanjameskim opened on Nov 14, 2019
  1

• Function show_F got an error in return

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#315 · Filter by author danilotat opened on Aug 1, 2019

• use labels instead of indices for lookups i n UPGMA demo

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#313 · Filter by author gregcaporaso opened on Apr 8, 2019

• Getting error while using blosum 62 instead of blosum 50

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#307 · Filter by author talhaanwarch opened on Feb 27, 2019

• Change "word" to "kmer" in MSA chapter

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#296 · Filter by author gregcaporaso opened on Sep 11, 2018

• Applications chapter idea: methods benchmark

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#291 · Filter by author gregcaporaso opened on Aug 30, 2018

• Do we start working in sequences in fasta format or fastq format?

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#275 · Filter by author corburn opened on May 3, 2017

• Add reference for sequencing bias term

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#273 · Filter by author corburn opened on Apr 11, 2017

• Your tags are showing

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#271 · Filter by author corburn opened on Apr 11, 2017
  1

• local_alignment_search todo comment

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#255 · Filter by author corburn opened on Feb 28, 2017

• Add 'Back to main menu' button.

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#245 · Filter by author wmiklasewicz opened on Oct 6, 2016
  3

• improve tree visualizations

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#213 · Filter by author gregcaporaso opened on Mar 28, 2016

• Inde or Index?

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#194 · Filter by author lsl5 opened on Jan 20, 2016
  3

• include "educational" implementations of scikit-bio functionality

  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#180 · Filter by author gregcaporaso opened on Nov 19, 2015

• dynamically generate tree diagrams

  example enhancementunmet dependencies
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#128 · Filter by author gregcaporaso opened on Apr 9, 2015

• Practicing Reproducible Bioinformatics

  chapterstage: not started
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#124 · Filter by author gregcaporaso opened on Apr 6, 2015 · 0.5.0

• RNA Sequence Coevolution and Structure Prediction

  chapterstage: not started
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#123 · Filter by author gregcaporaso opened on Apr 6, 2015 · 0.5.0

• Sequence Database Searching

  chapterstage: draftingstatus: in progress
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#122 · Filter by author gregcaporaso opened on Apr 6, 2015 · 0.2.0: updated Studying Biological Diversity

• Finding Biological Data

  chapterstage: not started
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#120 · Filter by author gregcaporaso opened on Apr 6, 2015 · 0.2.0

• Phylogenetic Reconstruction

  chapterstage: draftingstatus: on deck
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#119 · Filter by author gregcaporaso opened on Apr 6, 2015 · 0.2.0: updated Studying Biological Diversity

• Sequence Clustering and Mapping

  chapterstage: revisingstatus: on deck
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#113 · Filter by author gregcaporaso opened on Apr 2, 2015 · 0.2.0

• test notebooks for pep8

  build
  applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics#111 · Filter by author gregcaporaso opened on Mar 31, 2015 · 0.2.0: updated Studying Biological Diversity
  2